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Class Diagram

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OpenMM Class Diagram
Mar 3, 2014
Author: Lee-Ping Wang
A descriptive diagram of concepts and relationships in OpenMM.

Manuals

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Slides, Videos, and Other Materials from Workshops

2. Previous Workshop Material

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March2013 Workshop Presentations
Mar 3, 2013
Author: Joy Ku

MD Symposium -- February 13, 2009

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1a -- Slides: Introduction to Molecular Dynamics -- Vijay Pande
Feb 2, 2009
Author: Blanca Pineda

1b -- Video: Introduction to Molecular Dynamics -- Vijay Pande
Feb 2, 2009
Author: Blanca Pineda

2a -- Slides: OpenMM/Zephyr introduction/demo/tutorial -- Christopher Bruns
Feb 2, 2009
Author: Blanca Pineda

2b -- Video: OpenMM/Zephyr introduction/demo/tutorial -- Christopher Bruns
Feb 2, 2009
Author: Blanca Pineda

3a -- Slides: Introduction to Advanced Topics -- Vijay Pande
Feb 2, 2009
Author: Blanca Pineda

3b -- Video: Introduction to Advanced Topics -- Vijay Pande
Mar 3, 2009
Author: Blanca Pineda

4a -- Slides: Introduction to and Hands-on OpenMM/MDrun -- Mark Friedrichs and Peter Eastman
Feb 2, 2009
Author: Blanca Pineda

4b -- Video: Introduction to and Hands-on OpenMM/MDrun -- Mark Friedrichs and Peter Eastman
Feb 2, 2009
Author: Blanca Pineda

Rapid Prototyping and Simulations on GPU Workshop, Day 1 -- September 6-7, 2012

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1a -- Slides: Introduction to Running Simulations with OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

1b -- Video: Introduction to Running Simulations with OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

2a -- Slides: Exercises - Running Simulations with OpenMM -- Diwakar Shukla
Feb 2, 2013
Author: Claudia McClure

2b -- Video: Exercises - Running Simulations with OpenMM -- Diwakar Shukla
Feb 2, 2013
Author: Claudia McClure

3a -- Slides: Introduction to the OpenMM API -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

3b -- Video: Introduction to the OpenMM API - Peter Eastman
Feb 2, 2013
Author: Claudia McClure

4a -- Slides: Exercises - Customizing Forces and Integrators with OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

4b -- Video: Exercises - Customizing Forces and Integrators with OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

5a -- Slides: Exercise - Using AMOEBA Polarizable Force Fields -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

5b -- Video: Exercise - Using AMOEBA Polarizable Force Fields -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

6a -- Slides: Creating and Using Force Fields for New Molecules -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

Rapid Prototyping and Simulations on GPU Workshop, Day 2 -- September 6-7, 2012

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1a -- Slides: Validation of OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

1b -- Video: Validation of OpenMM -- Peter Eastman
Feb 2, 2013
Author: Claudia McClure

2a -- Slides: Force Field Parameterization -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

2b -- Video: Force Field Parameterization -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

3a -- Slides: Free Energy Calculations and OpenMM -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

3b -- Video: Free Energy Calculations and OpenMM -- Lee-Ping Wang
Feb 2, 2013
Author: Claudia McClure

4a -- Slides: Introduction to Markov State Models for Trajectory Analysis -- Kyle Beauchamp and Robert McGibbon
Feb 2, 2013
Author: Claudia McClure

4b -- Video: Introduction to Markov State Models for Trajectory Analysis -- Kyle Beauchamp and Robert McGibbon
Feb 2, 2013
Author: Claudia McClure

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