SimTK: Molmodel: SimTK molecular modeling API: Downloads

Molmodel: SimTK molecular modeling API

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THIS DOWNLOAD REPOSITORY IS OBSOLETE! Please get the latest code from github: https://github.com/samuelflores/molmodel.git This page provides binary and source releases of Molmodel, starting with version 2.2. (Earlier releases were packaged as part of the SimTKcore project.) IMPORTANT NOTE: You must install Simbody first before installing or building Molmodel. If you want to use OpenMM acceleration then you should also install OpenMM prior to Molmodel. Need help? Use the help forum: Advanced -> Public
Downloads instructions and details

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Molmodel

These are the release packages for Molmodel, starting with release 2.2. (Earlier releases were packaged in the SimTKcore project.) Pre-built binaries are provided for a variety of Windows, Mac, and Linux platforms. A single source release is supplied that can be used to build for any platform. NOTE: You must install a compatible version of Simbody first before installing Molmodel.

Molmodel 2.2

Jun 15, 2011

This is release 2.2 of Molmodel, built from the Molmodel2.2-Source.zip distribution (below). Please download, test, and report problems and successes to the Molmodel forum under Advanced->Public Forums.

Download Package

Download Links

Linux 64-bit binaries

Molmodel2.2-Linux64-gcc4.4.4.zip

Jun 14, 2011

23 MB

Linux

Application/binary

Primary 64-bit Linux package built using gcc 4.4.4; be sure to use the matching Simbody2.2 package.

Molmodel2.2-Linux64-gcc4.4.5.zip

Jun 14, 2011

24 MB

Linux

Application/binary

Alternate 64-bit Linux binaries built with gcc 4.4.5; be sure to use matching Simbody2.2 package.

Linux 32-bit binaries

Molmodel2.2-Linux32-gcc4.1.2.zip

Jun 15, 2011

22 MB

Linux

Application/binary

Primary 32-bit Linux package compiled with gcc 4.1.2; be sure to use the matching Simbody2.2 package.

Molmodel2.2-Linux32-gcc4.4.3.zip

Jun 14, 2011

23 MB

Linux

Application/binary

Alternate 32-bit Linux package build with gcc 4.4.3; be sure to use matching Simbody2.2 package.

Mac binary (32 bit)

Molmodel2.2-Mac32-OSX10.5.zip

Jun 14, 2011

19 MB

Mac OS X

Application/binary

Mac 32-bit binary (not universal). It was built using the OSX 10.5 (Leopard) SDK with gcc 4.2.1. Works on Snow Leopard too.

Windows binaries (32 bit)

Molmodel2.2-Windows32-VS10P.zip

Jun 14, 2011

21 MB

Windows

Application/binary

Windows 32-bit binary compiled with Visual Studio 10 Professional (2010)

Molmodel2.2-Windows32-VS9P.zip

Jun 14, 2011

20 MB

Windows

Application/binary

Windows 32-bit binary compiled with Visual Studio 9 Professional (2008)

Source code

Molmodel2.2-Source.zip

Jun 14, 2011

10 MB

Any

Source code

Molmodel 2.2 source code distribution, exported from Subversion branches/Molmodel2.2. See Simbody Documents page for instructions.

Documentation Links

Molmodel2.2UsersGuide.pdf

Jun 15, 2011

Provides background, installation instructions, and tutorials. See the Documents page for more.

PLEASE CITE THESE PAPERS

Schmidt, J.P.; Delp, S.L.; Sherman, M.A.; Taylor, C.A.; Pande, V.S.; Altman, R.B. "The Simbios National Center: Systems Biology in Motion" Proceedings of the IEEE 96(8):1266-1280 (2008) View

ADDITIONAL PAPERS

Flores, S.C.; Sherman, M.A.; Bruns, C.M.; Eastman, P.; Altman, R.B. "Fast flexible modeling of RNA structure using internal coordinates" IEEE/ACM Transactions on Computational Biology and Bioinformatics 99 (2010) View

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Version 4.2.2. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 6.0.5.

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