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Non-Thioredoxin Trajs
Simulation trajectories for 48 non-thioredoxin proteins PDB IDs: 1AGN, 1AW6, 1BTO, 1DE2, 1EGR, 1EXK, 1F81, 1FAQ, 1FO5, 1FOV, 1G7O, 1HRA, 1HYU, 1JHB, 1KTE, 1LU4, 1M2J, 1N7J, 1NHO, 1OAZ, 1P0C, 1QYP, 1R4O, 1SVL, 1TEV, 1UWV, 1VS8, 1Z3E, 1Z9H, 1ZUD, 2B5X, 2CQ9, 2DBC, 2FLS, 2FY6, 2GQM, 2H30, 2HT9, 2HYX, 2JOX, 2R2J, 2RLI, 2ZP8, 3C1S, 3CTG, 3EVI, 3G1P, 3GLF
Non-Thioredoxin Testing Proteins
Apr 26, 2011

  

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Apr 26, 2011
988 MB
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Apr 26, 2011
924 MB
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Putative Thioredoxin Trajs
Putative Thioredoxin Testing Proteins
Apr 26, 2011

  

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Apr 26, 2011
772 MB
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Thioredoxin FEATURE Models
Thioredoxin FEATURE Models
Aug 10, 2010

  

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Apr 18, 2011
39 KB
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Thioredoxin FEATURE model centered on the sulfur atom of the N-terminal active site cysteine

Apr 18, 2011
39 KB
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Thioredoxin FEATURE model centered on the sulfur atom of the C-terminal active site cysteine


Thioredoxin HMM
Thioredoxin HMM
Aug 10, 2010

  

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Apr 18, 2011
74 KB
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Thioredoxin HMM created by HMMER using thioredoxin.alignment

Apr 18, 2011
1 KB
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Structural multiple sequence alignment of 6 Thioredoxins (PDB: 1A2L, 1ERT, 1TJD, 2FWH, 2PPT, 3EMX)


Thioredoxin Trajs
Simulation trajectories for the six thioredoxin proteins used to train HMMER and FEATURE. PDB IDs: 1A2L, 1ERT, 1TJD, 2FWH, 2PPT, 3EMX
Thioredoxin Training Proteins
Aug 10, 2010

  

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Apr 24, 2011
557 MB
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10ns explicit solvent simulation (PDB: 1A2L)

Apr 24, 2011
236 MB
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10ns explicit solvent simulation (PDB ID: 1ERT)

Apr 24, 2011
648 MB
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10ns explicit solvent simulation (PDB ID: 1TJD)

Apr 24, 2011
267 MB
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10ns explicit solvent simulation (PDB ID: 2FWH)

Apr 24, 2011
777 MB
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10ns explicit solvent simulation (PDB ID: 2PPT)

Apr 24, 2011
294 MB
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10ns explicit solvent simulation (PDB ID: 3EMX)

Apr 24, 2011
42 MB
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10ns implicit solvent simulation (PDB ID: 1A2L)

Apr 24, 2011
23 MB
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10ns implicit solvent simulation (PDB ID: 1ERT)

Apr 24, 2011
47 MB
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10ns implicit solvent simulation (PDB ID: 1TJD)

Apr 24, 2011
26 MB
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10ns implicit solvent simulation (PDB ID: 2FWH)

Apr 24, 2011
32 MB
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10ns implicit solvent simulation (PDB ID: 2PPT)

Apr 24, 2011
28 MB
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10ns implicit solvent simulation (PDB ID: 3EMX)


Training Trajectories
Simulation trajectories for 56 thioredoxin proteins PDB IDs: 1DBY, 1EP7, 1F9M, 1FB0, 1GH2, 1JFU, 1KNG, 1M7T, 1MEK, 1NSW, 1O73, 1SEN, 1SU9, 1SYR, 1T00, 1T3B, 1THX, 1UN2, 1UVZ, 1V58, 1V9W, 1WMJ, 1WOU, 1X5C, 1X5D, 1X5E, 1XFL, 1XOB, 1XWC, 2ALB, 2B1L, 2B5E, 2DIZ, 2DJ1, 2DJ2, 2DJ3, 2DJJ, 2DML, 2DMM, 2FA4, 2G0F, 2GZY, 2I1U, 2IJY, 2O7K, 2OE1, 3C7M, 3D21, 3DXB, 3ED3, 3ERW, 3F3Q, 3F8U, 3GHA, 3H93, 3HD5
Thioredoxin Testing Proteins
Apr 26, 2011

  

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Apr 26, 2011
814 MB
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Apr 26, 2011
1043 MB
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