MEDLINE Parser - Load XML MEDLINE Data into RDBMS
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Parse and load MEDLINE XML data into an RDBMS.

This project imports the 2010 MEDLINE data available in XML format into a MySQL 5.1 database using Java 1.6 and MySQL Connector/J.

This is an update for 2010 based on the software described within http://www.biomedcentral.com/1471-2105/5/146/abstract and available from http://biotext.berkeley.edu/software.html.

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Last updated
Jul 30, 2010
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David Julian

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This is a Java 1.6 project which builds with Maven 2 and runs on the command line. Once built, it can process the MEDLINE XML input files. (See http://www.nlm.nih.gov/bsd/sample_records_avail.html for an intro.)

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