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AmoebaTorsionTorsionForceImpl.h
1 #ifndef OPENMM_AMOEBA_TORSION_TORSION_FORCE_IMPL_H_
2 #define OPENMM_AMOEBA_TORSION_TORSION_FORCE_IMPL_H_
3 
4 /* -------------------------------------------------------------------------- *
5  * OpenMMAmoeba *
6  * -------------------------------------------------------------------------- *
7  * This is part of the OpenMM molecular simulation toolkit originating from *
8  * Simbios, the NIH National Center for Physics-Based Simulation of *
9  * Biological Structures at Stanford, funded under the NIH Roadmap for *
10  * Medical Research, grant U54 GM072970. See https://simtk.org. *
11  * *
12  * Portions copyright (c) 2008 Stanford University and the Authors. *
13  * Authors: *
14  * Contributors: *
15  * *
16  * Permission is hereby granted, free of charge, to any person obtaining a *
17  * copy of this software and associated documentation files (the "Software"), *
18  * to deal in the Software without restriction, including without limitation *
19  * the rights to use, copy, modify, merge, publish, distribute, sublicense, *
20  * and/or sell copies of the Software, and to permit persons to whom the *
21  * Software is furnished to do so, subject to the following conditions: *
22  * *
23  * The above copyright notice and this permission notice shall be included in *
24  * all copies or substantial portions of the Software. *
25  * *
26  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
27  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
28  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
29  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
30  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
31  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
32  * USE OR OTHER DEALINGS IN THE SOFTWARE. *
33  * -------------------------------------------------------------------------- */
34 
35 #include "openmm/internal/ForceImpl.h"
36 #include "openmm/AmoebaTorsionTorsionForce.h"
37 #include "openmm/Kernel.h"
38 #include <utility>
39 #include <string>
40 
41 namespace OpenMM {
42 
48 public:
51  void initialize(ContextImpl& context);
53  return owner;
54  }
56  // This force field doesn't update the state directly.
57  }
58  double calcForcesAndEnergy(ContextImpl& context, bool includeForces, bool includeEnergy, int groups);
59  std::map<std::string, double> getDefaultParameters() {
60  return std::map<std::string, double>(); // This force field doesn't define any parameters.
61  }
62  std::vector<std::string> getKernelNames();
63 
64  OPENMM_EXPORT_AMOEBA static void reorderGrid( const TorsionTorsionGrid& grid, TorsionTorsionGrid& reorderedGrid );
65 
66 private:
67  const AmoebaTorsionTorsionForce& owner;
68  Kernel kernel;
69 };
70 
71 } // namespace OpenMM
72 
73 #endif /*OPENMM_AMOEBA_TORSION_TORSION_FORCE_IMPL_H_*/
This is the internal implementation of a Context.
Definition: ContextImpl.h:53
std::vector< std::vector< std::vector< double > > > TorsionTorsionGrid
Definition: AmoebaTorsionTorsionForce.h:43
This class implements the Amoeba torsion-torsion interaction.
Definition: AmoebaTorsionTorsionForce.h:53
void updateContextState(ContextImpl &context)
This method is called at the beginning of each time step.
Definition: AmoebaTorsionTorsionForceImpl.h:55
AmoebaTorsionTorsionForceImpl(const AmoebaTorsionTorsionForce &owner)
const AmoebaTorsionTorsionForce & getOwner() const
Get the Force object from which this ForceImpl was created.
Definition: AmoebaTorsionTorsionForceImpl.h:52
This is the internal implementation of AmoebaTorsionTorsionForce.
Definition: AmoebaTorsionTorsionForceImpl.h:47
std::map< std::string, double > getDefaultParameters()
Get a map containing the default values for all adjustable parameters defined by this ForceImpl...
Definition: AmoebaTorsionTorsionForceImpl.h:59
static OPENMM_EXPORT_AMOEBA void reorderGrid(const TorsionTorsionGrid &grid, TorsionTorsionGrid &reorderedGrid)
void initialize(ContextImpl &context)
This is called after the ForceImpl is created and before updateContextState(), calcForces(), or calcEnergy() is called on it.
A Kernel encapsulates a particular implementation of a calculation that can be performed on the data ...
Definition: Kernel.h:58
A ForceImpl provides the internal implementation of a Force.
Definition: ForceImpl.h:57
std::vector< std::string > getKernelNames()
Get the names of all Kernels used by this Force.
double calcForcesAndEnergy(ContextImpl &context, bool includeForces, bool includeEnergy, int groups)
Calculate the force on each particle generated by this ForceImpl and/or this ForceImpl&#39;s contribution...