OpenMM
Main Page
Classes
All
Classes
Namespaces
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
HarmonicAngleForce.h
1
#ifndef OPENMM_HARMONICANGLEFORCE_H_
2
#define OPENMM_HARMONICANGLEFORCE_H_
3
4
/* -------------------------------------------------------------------------- *
5
* OpenMM *
6
* -------------------------------------------------------------------------- *
7
* This is part of the OpenMM molecular simulation toolkit originating from *
8
* Simbios, the NIH National Center for Physics-Based Simulation of *
9
* Biological Structures at Stanford, funded under the NIH Roadmap for *
10
* Medical Research, grant U54 GM072970. See https://simtk.org. *
11
* *
12
* Portions copyright (c) 2008-2012 Stanford University and the Authors. *
13
* Authors: Peter Eastman *
14
* Contributors: *
15
* *
16
* Permission is hereby granted, free of charge, to any person obtaining a *
17
* copy of this software and associated documentation files (the "Software"), *
18
* to deal in the Software without restriction, including without limitation *
19
* the rights to use, copy, modify, merge, publish, distribute, sublicense, *
20
* and/or sell copies of the Software, and to permit persons to whom the *
21
* Software is furnished to do so, subject to the following conditions: *
22
* *
23
* The above copyright notice and this permission notice shall be included in *
24
* all copies or substantial portions of the Software. *
25
* *
26
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
27
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
28
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
29
* THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
30
* DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
31
* OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
32
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
33
* -------------------------------------------------------------------------- */
34
35
#include "Force.h"
36
#include "Vec3.h"
37
#include <map>
38
#include <vector>
39
#include "internal/windowsExport.h"
40
41
namespace
OpenMM {
42
50
class
OPENMM_EXPORT
HarmonicAngleForce
:
public
Force
{
51
public
:
55
HarmonicAngleForce
();
59
int
getNumAngles
()
const
{
60
return
angles.size();
61
}
72
int
addAngle(
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k);
83
void
getAngleParameters(
int
index,
int
& particle1,
int
& particle2,
int
& particle3,
double
& angle,
double
& k)
const
;
94
void
setAngleParameters(
int
index,
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k);
104
void
updateParametersInContext(
Context
& context);
105
protected
:
106
ForceImpl
* createImpl()
const
;
107
private
:
108
class
AngleInfo;
109
std::vector<AngleInfo> angles;
110
};
111
116
class
HarmonicAngleForce::AngleInfo {
117
public
:
118
int
particle1, particle2, particle3;
119
double
angle, k;
120
AngleInfo() {
121
particle1 = particle2 = particle3 = -1;
122
angle = k = 0.0;
123
}
124
AngleInfo(
int
particle1,
int
particle2,
int
particle3,
double
angle,
double
k) :
125
particle1(particle1), particle2(particle2), particle3(particle3), angle(angle), k(k) {
126
}
127
};
128
129
}
// namespace OpenMM
130
131
#endif
/*OPENMM_HARMONICANGLEFORCE_H_*/
OpenMM::Context
A Context stores the complete state of a simulation.
Definition:
Context.h:67
OpenMM::Force
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition:
Force.h:65
OpenMM::HarmonicAngleForce
This class implements an interaction between groups of three particles that varies harmonically with ...
Definition:
HarmonicAngleForce.h:50
OpenMM::ForceImpl
A ForceImpl provides the internal implementation of a Force.
Definition:
ForceImpl.h:57
OpenMM::HarmonicAngleForce::getNumAngles
int getNumAngles() const
Get the number of harmonic bond angle terms in the potential function.
Definition:
HarmonicAngleForce.h:59
openmmapi
include
openmm
HarmonicAngleForce.h
Generated on Fri Jan 17 2014 15:20:12 for OpenMM by
1.8.5