OpenMM
Main Page
Related Pages
Classes
All
Classes
Namespaces
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Pages
RBTorsionForce.h
1
#ifndef OPENMM_RBTORSIONFORCE_H_
2
#define OPENMM_RBTORSIONFORCE_H_
3
4
/* -------------------------------------------------------------------------- *
5
* OpenMM *
6
* -------------------------------------------------------------------------- *
7
* This is part of the OpenMM molecular simulation toolkit originating from *
8
* Simbios, the NIH National Center for Physics-Based Simulation of *
9
* Biological Structures at Stanford, funded under the NIH Roadmap for *
10
* Medical Research, grant U54 GM072970. See https://simtk.org. *
11
* *
12
* Portions copyright (c) 2008-2012 Stanford University and the Authors. *
13
* Authors: Peter Eastman *
14
* Contributors: *
15
* *
16
* Permission is hereby granted, free of charge, to any person obtaining a *
17
* copy of this software and associated documentation files (the "Software"), *
18
* to deal in the Software without restriction, including without limitation *
19
* the rights to use, copy, modify, merge, publish, distribute, sublicense, *
20
* and/or sell copies of the Software, and to permit persons to whom the *
21
* Software is furnished to do so, subject to the following conditions: *
22
* *
23
* The above copyright notice and this permission notice shall be included in *
24
* all copies or substantial portions of the Software. *
25
* *
26
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
27
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, *
28
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL *
29
* THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, *
30
* DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR *
31
* OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE *
32
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
33
* -------------------------------------------------------------------------- */
34
35
#include "Force.h"
36
#include "Vec3.h"
37
#include <map>
38
#include <vector>
39
#include "internal/windowsExport.h"
40
41
namespace
OpenMM {
42
50
class
OPENMM_EXPORT
RBTorsionForce
:
public
Force
{
51
public
:
55
RBTorsionForce
();
59
int
getNumTorsions
()
const
{
60
return
rbTorsions.size();
61
}
77
int
addTorsion(
int
particle1,
int
particle2,
int
particle3,
int
particle4,
double
c0,
double
c1,
double
c2,
double
c3,
double
c4,
double
c5);
93
void
getTorsionParameters(
int
index,
int
& particle1,
int
& particle2,
int
& particle3,
int
& particle4,
double
& c0,
double
& c1,
double
& c2,
double
& c3,
double
& c4,
double
& c5)
const
;
109
void
setTorsionParameters(
int
index,
int
particle1,
int
particle2,
int
particle3,
int
particle4,
double
c0,
double
c1,
double
c2,
double
c3,
double
c4,
double
c5);
119
void
updateParametersInContext(
Context
& context);
120
protected
:
121
ForceImpl
* createImpl()
const
;
122
private
:
123
class
RBTorsionInfo;
124
std::vector<RBTorsionInfo> rbTorsions;
125
};
126
131
class
RBTorsionForce::RBTorsionInfo {
132
public
:
133
int
particle1, particle2, particle3, particle4;
134
double
c[6];
135
RBTorsionInfo() {
136
particle1 = particle2 = particle3 = particle4 = -1;
137
c[0] = c[1] = c[2] = c[3] = c[4] = c[5] = 0.0;
138
}
139
RBTorsionInfo(
int
particle1,
int
particle2,
int
particle3,
int
particle4,
double
c0,
double
c1,
double
c2,
double
c3,
double
c4,
double
c5) :
140
particle1(particle1), particle2(particle2), particle3(particle3), particle4(particle4) {
141
c[0] = c0;
142
c[1] = c1;
143
c[2] = c2;
144
c[3] = c3;
145
c[4] = c4;
146
c[5] = c5;
147
}
148
};
149
150
}
// namespace OpenMM
151
152
#endif
/*OPENMM_RBTORSIONFORCE_H_*/
OpenMM::Context
A Context stores the complete state of a simulation.
Definition:
Context.h:67
OpenMM::RBTorsionForce
This class implements an interaction between groups of four particles that varies with the torsion an...
Definition:
RBTorsionForce.h:50
OpenMM::Force
Force objects apply forces to the particles in a System, or alter their behavior in other ways...
Definition:
Force.h:65
OpenMM::ForceImpl
A ForceImpl provides the internal implementation of a Force.
Definition:
ForceImpl.h:57
OpenMM::RBTorsionForce::getNumTorsions
int getNumTorsions() const
Get the number of Ryckaert-Bellemans torsion terms in the potential function.
Definition:
RBTorsionForce.h:59
openmm
openmmapi
include
openmm
RBTorsionForce.h
Generated on Mon Aug 25 2014 10:37:47 for OpenMM by
1.8.5