API  4.4
For C++ developers
OpenSim::Umberger2010MuscleMetabolicsProbe Class Reference

Umberger2010MuscleMetabolicsProbe is a Probe ModelComponent for computing the net metabolic energy rate of a set of Muscles in the model during a simulation. More...

+ Inheritance diagram for OpenSim::Umberger2010MuscleMetabolicsProbe:

OpenSim Properties, Sockets, Outputs, Inputs

Properties (single-value)

Default value = true

bool activation_maintenance_rate_on
 "Specify whether activation & maintenance heat rate is to be calculated (true/false)." More...
 
bool shortening_rate_on
 "Specify whether shortening heat rate is to be calculated (true/false)." More...
 
bool basal_rate_on
 "Specify whether basal heat rate is to be calculated (true/false)." More...
 
bool mechanical_work_rate_on
 "Specify whether mechanical work rate is to be calculated (true/false)." More...
 
bool enforce_minimum_heat_rate_per_muscle
 "Specify whether the total heat rate for a muscle will be clamped to a " "minimum value of 1.0 W/kg (true/false)." More...
 
double aerobic_factor
 "Aerobic scale factor (S=1.0 for primarily anaerobic conditions and S=1.5 " "for primarily aerobic conditions. See Umberger et al., (2003)." More...
 
double basal_coefficient
 "Basal metabolic coefficient." More...
 
double basal_exponent
 "Basal metabolic exponent." More...
 
double muscle_effort_scaling_factor
 "Scale the excitation and activation values used by the probe to " "compensate for solutions with excessive coactivation (e.g., when a " "suboptimal tracking strategy is used)." More...
 
bool use_Bhargava_recruitment_model
 "Specify whether the recruitment model described by Bhargava et al. " "(2004) will used to determine the slow-twitch fiber ratio " "(true/false). Disable to use the model as published in Umberger " "(2010)." More...
 
bool include_negative_mechanical_work
 "Specify whether negative mechanical work will be included in Wdot and " "a coefficient of 4.0 will be used to calculate alpha_L (true/false). " "Disable to use the model as published in Umberger (2010)." More...
 
bool forbid_negative_total_power
 "Specify whether the total power for each muscle must remain positive " "(true/false). Disable to use the model as published in Umberger " "(2010)." More...
 
bool report_total_metabolics_only
 "If set to false, the individual muscle metabolics, basal rate, and " "total summation will be reported. If set to true, only the total " "summation will be reported." More...
 
Properties (unnamed)
Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet
 "A set containing, for each muscle, the parameters " "required to calculate muscle metabolic power." More...
 
- OpenSim Properties, Sockets, Outputs, Inputs inherited from OpenSim::Probe
bool enabled
 "Flag indicating whether the Probe is Enabled." More...
 
std::string probe_operation
 "The operation to perform on the probe input value: " "'value'(no operation, just return the probe value), 'integrate', " "'differentiate', 'minimum', 'minabs', 'maximum', 'maxabs'." More...
 
double gain
 "Constant gain to scale the probe output by." More...
 
double initial_conditions_for_integration
 "Array of initial conditions to be specified if the 'integrate' operation is " "selected. Note that the size of initial conditions must be the same size as " "the data being integrated, otherwise an exception will be thrown." More...
 
SimTK::Vector probe_outputs
 Provides the value of getProbeOutputs() and is available at stage SimTK::Stage::Report . More...
 
- OpenSim Properties, Sockets, Outputs, Inputs inherited from OpenSim::Component
Component components
 "List of components that this component owns and serializes." More...
 

Public Member Functions

 Umberger2010MuscleMetabolicsProbe ()
 Default constructor. More...
 
 Umberger2010MuscleMetabolicsProbe (const bool activation_maintenance_rate_on, const bool shortening_rate_on, const bool basal_rate_on, const bool work_rate_on)
 Convenience constructor. More...
 
virtual SimTK::Vector computeProbeInputs (const SimTK::State &state) const override
 Compute muscle metabolic power. More...
 
int getNumProbeInputs () const override
 Returns the number of probe inputs in the vector returned by computeProbeInputs(). More...
 
virtual OpenSim::Array< std::string > getProbeOutputLabels () const override
 Returns the column labels of the probe values for reporting. More...
 
Property-related functions
const bool & get_activation_maintenance_rate_on () const
 Get the value of the activation_maintenance_rate_on property. More...
 
bool & upd_activation_maintenance_rate_on ()
 Get a writable reference to the activation_maintenance_rate_on property. More...
 
void set_activation_maintenance_rate_on (const bool &value)
 Set the value of the activation_maintenance_rate_on property. More...
 
const bool & get_shortening_rate_on () const
 Get the value of the shortening_rate_on property. More...
 
bool & upd_shortening_rate_on ()
 Get a writable reference to the shortening_rate_on property. More...
 
void set_shortening_rate_on (const bool &value)
 Set the value of the shortening_rate_on property. More...
 
const bool & get_basal_rate_on () const
 Get the value of the basal_rate_on property. More...
 
bool & upd_basal_rate_on ()
 Get a writable reference to the basal_rate_on property. More...
 
void set_basal_rate_on (const bool &value)
 Set the value of the basal_rate_on property. More...
 
const bool & get_mechanical_work_rate_on () const
 Get the value of the mechanical_work_rate_on property. More...
 
bool & upd_mechanical_work_rate_on ()
 Get a writable reference to the mechanical_work_rate_on property. More...
 
void set_mechanical_work_rate_on (const bool &value)
 Set the value of the mechanical_work_rate_on property. More...
 
const bool & get_enforce_minimum_heat_rate_per_muscle () const
 Get the value of the enforce_minimum_heat_rate_per_muscle property. More...
 
bool & upd_enforce_minimum_heat_rate_per_muscle ()
 Get a writable reference to the enforce_minimum_heat_rate_per_muscle property. More...
 
void set_enforce_minimum_heat_rate_per_muscle (const bool &value)
 Set the value of the enforce_minimum_heat_rate_per_muscle property. More...
 
const double & get_aerobic_factor () const
 Get the value of the aerobic_factor property. More...
 
double & upd_aerobic_factor ()
 Get a writable reference to the aerobic_factor property. More...
 
void set_aerobic_factor (const double &value)
 Set the value of the aerobic_factor property. More...
 
const double & get_basal_coefficient () const
 Get the value of the basal_coefficient property. More...
 
double & upd_basal_coefficient ()
 Get a writable reference to the basal_coefficient property. More...
 
void set_basal_coefficient (const double &value)
 Set the value of the basal_coefficient property. More...
 
const double & get_basal_exponent () const
 Get the value of the basal_exponent property. More...
 
double & upd_basal_exponent ()
 Get a writable reference to the basal_exponent property. More...
 
void set_basal_exponent (const double &value)
 Set the value of the basal_exponent property. More...
 
const double & get_muscle_effort_scaling_factor () const
 Get the value of the muscle_effort_scaling_factor property. More...
 
double & upd_muscle_effort_scaling_factor ()
 Get a writable reference to the muscle_effort_scaling_factor property. More...
 
void set_muscle_effort_scaling_factor (const double &value)
 Set the value of the muscle_effort_scaling_factor property. More...
 
const bool & get_use_Bhargava_recruitment_model () const
 Get the value of the use_Bhargava_recruitment_model property. More...
 
bool & upd_use_Bhargava_recruitment_model ()
 Get a writable reference to the use_Bhargava_recruitment_model property. More...
 
void set_use_Bhargava_recruitment_model (const bool &value)
 Set the value of the use_Bhargava_recruitment_model property. More...
 
const bool & get_include_negative_mechanical_work () const
 Get the value of the include_negative_mechanical_work property. More...
 
bool & upd_include_negative_mechanical_work ()
 Get a writable reference to the include_negative_mechanical_work property. More...
 
void set_include_negative_mechanical_work (const bool &value)
 Set the value of the include_negative_mechanical_work property. More...
 
const bool & get_forbid_negative_total_power () const
 Get the value of the forbid_negative_total_power property. More...
 
bool & upd_forbid_negative_total_power ()
 Get a writable reference to the forbid_negative_total_power property. More...
 
void set_forbid_negative_total_power (const bool &value)
 Set the value of the forbid_negative_total_power property. More...
 
const bool & get_report_total_metabolics_only () const
 Get the value of the report_total_metabolics_only property. More...
 
bool & upd_report_total_metabolics_only ()
 Get a writable reference to the report_total_metabolics_only property. More...
 
void set_report_total_metabolics_only (const bool &value)
 Set the value of the report_total_metabolics_only property. More...
 
const Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSetget_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet () const
 Get the value of the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property. More...
 
Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSetupd_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet ()
 Get a writable reference to the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property. More...
 
void set_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet (const Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet &value)
 Set the value of the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property. More...
 
- Public Member Functions inherited from OpenSim::Probe
 Probe ()
 
void reset (SimTK::State &s)
 Reset (initialize) the underlying Probe SimTK::Measure. More...
 
int getNumInternalMeasureStates () const
 Get the number of states in the underlying SimTK::Measure. More...
 
bool isEnabled () const
 Returns true if the Probe is enabled and false if the probe is disabled. More...
 
void setEnabled (bool enabled)
 Set the Probe as enabled (true) or disabled (false). More...
 
std::string getOperation () const
 Return the operation being performed on the probe value. More...
 
void setOperation (std::string probe_operation)
 Set the operation being performed on the probe value. More...
 
SimTK::Vector getInitialConditions () const
 Return the initial conditions (when the probe_operation is set to 'integrate'). More...
 
void setInitialConditions (SimTK::Vector initial_conditions_for_integration)
 Set the initial conditions (when the probe_operation is set to 'integrate'). More...
 
double getGain () const
 Return the gain to apply to the probe output. More...
 
void setGain (double gain)
 Set the gain to apply to the probe output. More...
 
SimTK::Vector getProbeOutputs (const SimTK::State &state) const
 Returns the values of the probe after the operation has been performed. More...
 
void updateFromXMLNode (SimTK::Xml::Element &node, int versionNumber) override
 Handle a change in XML syntax for Sockets. More...
 
const bool & get_enabled () const
 Get the value of the enabled property. More...
 
bool & upd_enabled ()
 Get a writable reference to the enabled property. More...
 
void set_enabled (const bool &value)
 Set the value of the enabled property. More...
 
const std::string & get_probe_operation () const
 Get the value of the probe_operation property. More...
 
std::string & upd_probe_operation ()
 Get a writable reference to the probe_operation property. More...
 
void set_probe_operation (const std::string &value)
 Set the value of the probe_operation property. More...
 
const double & get_initial_conditions_for_integration (int i) const
 Get the value of the i-th element of the initial_conditions_for_integration property. More...
 
double & upd_initial_conditions_for_integration (int i)
 Get a writable reference to the i-th element of the initial_conditions_for_integration property. More...
 
void set_initial_conditions_for_integration (int i, const double &value)
 Set the value of the i-th element of initial_conditions_for_integration property. More...
 
int append_initial_conditions_for_integration (const double &value)
 Append an element to the initial_conditions_for_integration property. More...
 
const double & get_gain () const
 Get the value of the gain property. More...
 
double & upd_gain ()
 Get a writable reference to the gain property. More...
 
void set_gain (const double &value)
 Set the value of the gain property. More...
 
void assign (Object &aObject) override
 This allows copy assignment in the Java GUI. More...
 
- Public Member Functions inherited from OpenSim::ModelComponent
 ModelComponent ()
 Default constructor. More...
 
 ModelComponent (const std::string &aFileName, bool aUpdateFromXMLNode=true)
 Construct ModelComponent from an XML file. More...
 
 ModelComponent (SimTK::Xml::Element &aNode)
 Construct ModelComponent from a specific node in an XML document. More...
 
virtual ~ModelComponent ()
 Destructor is virtual to allow concrete model component cleanup. More...
 
void connectToModel (Model &model)
 Connect this ModelComponent to its aggregate- a Model. More...
 
const ModelgetModel () const
 Get a const reference to the Model this component is part of. More...
 
ModelupdModel ()
 Get a modifiable reference to the Model this component is part of. More...
 
bool hasModel () const
 Does this ModelComponent have a Model associated with it? More...
 
void preScale (const SimTK::State &s, const ScaleSet &scaleSet)
 Perform any computations that must occur before ModelComponent::scale() is invoked on all ModelComponents in the Model. More...
 
void scale (const SimTK::State &s, const ScaleSet &scaleSet)
 Scale the ModelComponent. More...
 
void postScale (const SimTK::State &s, const ScaleSet &scaleSet)
 Perform any computations that must occur after ModelComponent::scale() has been invoked on all ModelComponents in the Model. More...
 
void assign (Object &aObject) override
 This allows copy assignment in the Java GUI. More...
 
- Public Member Functions inherited from OpenSim::Component
 Component ()
 Default constructor. More...
 
 Component (const std::string &aFileName, bool aUpdateFromXMLNode=true)
 Construct Component from an XML file. More...
 
 Component (SimTK::Xml::Element &aNode)
 Construct Component from a specific node in an XML document. More...
 
 Component (const Component &)=default
 Use default copy constructor and assignment operator. More...
 
Componentoperator= (const Component &)=default
 
virtual ~Component ()=default
 Destructor is virtual to allow concrete Component to cleanup. More...
 
virtual void generateDecorations (bool fixed, const ModelDisplayHints &hints, const SimTK::State &state, SimTK::Array_< SimTK::DecorativeGeometry > &appendToThis) const
 Optional method for generating arbitrary display geometry that reflects this Component at the specified state. More...
 
const SimTK::MultibodySystem & getSystem () const
 Get the underlying MultibodySystem that this component is connected to. More...
 
bool hasSystem () const
 Check if this component has an underlying MultibodySystem. More...
 
bool isComponentInOwnershipTree (const Component *component) const
 Does the provided component already exist anywhere in the ownership tree (not just subcomponents of this component)? More...
 
void addComponent (Component *subcomponent)
 Add a Component (as a subcomponent) of this component. More...
 
template<typename T = Component>
ComponentList< const T > getComponentList () const
 Get an iterator through the underlying subcomponents that this component is composed of. More...
 
template<typename T = Component>
ComponentList< T > updComponentList ()
 Similar to getComponentList(), except the resulting list allows one to modify the components. More...
 
template<typename T = Component>
unsigned countNumComponents () const
 Uses getComponentList<T>() to count the number of underlying subcomponents of the specified type. More...
 
std::string getAbsolutePathString () const
 Get the complete (absolute) pathname for this Component to its ancestral Component, which is the root of the tree to which this Component belongs. More...
 
ComponentPath getAbsolutePath () const
 Return a ComponentPath of the absolute path of this Component. More...
 
std::string getRelativePathString (const Component &wrt) const
 Get the relative path of this Component with respect to another Component, as a string. More...
 
ComponentPath getRelativePath (const Component &wrt) const
 Get the relative path of this Component with respect to another Component. More...
 
bool hasComponent (const std::string &pathname) const
 Query if there is a component (of any type) at the specified path name. More...
 
template<class C = Component>
bool hasComponent (const std::string &pathname) const
 Query if there is a component of a given type at the specified path name. More...
 
template<class C = Component>
const C & getComponent (const std::string &pathname) const
 Get a unique subcomponent of this Component by its path name and type 'C'. More...
 
template<class C = Component>
const C & getComponent (const ComponentPath &pathname) const
 
const ComponentgetComponent (const std::string &pathname) const
 Similar to the templatized getComponent(), except this returns the component as the generic Component type. More...
 
template<class C = Component>
C & updComponent (const std::string &name)
 Get a writable reference to a subcomponent. More...
 
template<class C = Component>
C & updComponent (const ComponentPath &name)
 
ComponentupdComponent (const std::string &pathname)
 Similar to the templatized updComponent(), except this returns the component as the generic Component type. More...
 
unsigned printComponentsMatching (const std::string &substring) const
 Print a list to the console of all components whose absolute path name contains the given string. More...
 
int getNumStateVariables () const
 Get the number of "continuous" state variables maintained by the Component and its subcomponents. More...
 
Array< std::string > getStateVariableNames () const
 Get the names of "continuous" state variables maintained by the Component and its subcomponents. More...
 
template<class C = Component>
const C * findComponent (const ComponentPath &pathToFind) const
 Find a Component to which this Component is an ancestor—in other words, a Component that is directly owned by this Component or is owned by one of its sub-components, sub-sub-components, etc. More...
 
template<class C = Component>
const C * findComponent (const std::string &pathToFind) const
 Same as findComponent(const ComponentPath&), but accepting a string (a path or just a name) as input. More...
 
const StateVariabletraverseToStateVariable (const std::string &pathName) const
 Get a StateVariable anywhere in the Component tree, given a StateVariable path. More...
 
const StateVariabletraverseToStateVariable (const ComponentPath &path) const
 Get a StateVariable anywhere in the Component tree, given a StateVariable path. More...
 
void finalizeFromProperties ()
 Define a Component's internal data members and structure according to its properties. More...
 
void finalizeConnections (Component &root)
 Satisfy the Component's connections specified by its Sockets and Inputs. More...
 
void clearConnections ()
 Disconnect/clear this Component from its aggregate component. More...
 
void addToSystem (SimTK::MultibodySystem &system) const
 Have the Component add itself to the underlying computational System. More...
 
void initStateFromProperties (SimTK::State &state) const
 Initialize Component's state variable values from its properties. More...
 
void setPropertiesFromState (const SimTK::State &state)
 Set Component's properties given a state. More...
 
int getNumSockets () const
 Get the number of Sockets in this Component. More...
 
std::vector< std::string > getSocketNames ()
 Collect and return the names of the sockets in this component. More...
 
template<typename T >
const T & getConnectee (const std::string &name) const
 Get the "connectee" object that the Component's Socket is bound to. More...
 
const ObjectgetConnectee (const std::string &name) const
 Get the connectee as an Object. More...
 
const AbstractSocketgetSocket (const std::string &name) const
 Get an AbstractSocket for the given socket name. More...
 
AbstractSocketupdSocket (const std::string &name)
 Get a writable reference to the AbstractSocket for the given socket name. More...
 
template<typename T >
const Socket< T > & getSocket (const std::string &name) const
 Get a const reference to the concrete Socket provided by this Component by name. More...
 
template<typename T >
Socket< T > & updSocket (const std::string &name)
 Get a writable reference to the concrete Socket provided by this Component by name. More...
 
void printSubcomponentInfo () const
 List all subcomponents by name and recurse into these components to list their subcomponents, and so on. More...
 
void printSocketInfo () const
 List all the Sockets of this component and whether or not they are connected. More...
 
void printInputInfo () const
 List all the inputs of this component and whether or not they are connected. More...
 
template<typename C >
void printSubcomponentInfo () const
 
void printOutputInfo (const bool includeDescendants=true) const
 Print outputs of this component and optionally, those of all subcomponents. More...
 
void assign (Object &aObject) override
 This allows copy assignment in the Java GUI. More...
 
int getNumInputs () const
 Access the number of Inputs that this component has. More...
 
int getNumOutputs () const
 Access the number of Outputs that this component has. More...
 
std::vector< std::string > getInputNames () const
 Collect and return the names of Inputs in this component as an std::vector. More...
 
std::vector< std::string > getOutputNames () const
 Collect and return the names of Outputs in this component as an std::vector. More...
 
const AbstractInputgetInput (const std::string &name) const
 Get an Input provided by this Component by name. More...
 
AbstractInputupdInput (const std::string &name)
 Get a writable reference to an Input provided by this Component by name. More...
 
template<typename T >
const Input< T > & getInput (const std::string &name) const
 Get a concrete Input that you can directly ask for its values. More...
 
const AbstractOutputgetOutput (const std::string &name) const
 Get the Output provided by this Component by name. More...
 
AbstractOutputupdOutput (const std::string &name)
 Get a writable reference to an Output provided by this Component by name. More...
 
SimTK::IteratorRange< OutputConstIteratorgetOutputs () const
 Iterate through all Outputs of this component. More...
 
int getModelingOption (const SimTK::State &state, const std::string &name) const
 Get a ModelingOption flag for this Component by name. More...
 
void setModelingOption (SimTK::State &state, const std::string &name, int flag) const
 Set the value of a ModelingOption flag for this Component. More...
 
template<typename T >
const T & getInputValue (const SimTK::State &state, const std::string &name) const
 Get the Input value that this component is dependent on. More...
 
template<typename T >
const T & getOutputValue (const SimTK::State &state, const std::string &name) const
 Get the Output value provided by this Component by name. More...
 
double getStateVariableValue (const SimTK::State &state, const std::string &name) const
 Get the value of a state variable allocated by this Component. More...
 
double getStateVariableValue (const SimTK::State &state, const ComponentPath &path) const
 Get the value of a state variable allocated by this Component. More...
 
void setStateVariableValue (SimTK::State &state, const std::string &name, double value) const
 Set the value of a state variable allocated by this Component by name. More...
 
SimTK::Vector getStateVariableValues (const SimTK::State &state) const
 Get all values of the state variables allocated by this Component. More...
 
void setStateVariableValues (SimTK::State &state, const SimTK::Vector &values) const
 Set all values of the state variables allocated by this Component. More...
 
double getStateVariableDerivativeValue (const SimTK::State &state, const std::string &name) const
 Get the value of a state variable derivative computed by this Component. More...
 
double getDiscreteVariableValue (const SimTK::State &state, const std::string &name) const
 Get the value of a discrete variable allocated by this Component by name. More...
 
void setDiscreteVariableValue (SimTK::State &state, const std::string &name, double value) const
 Set the value of a discrete variable allocated by this Component by name. More...
 
template<class T >
SimTK::CacheEntryIndex getCacheVariableIndex (const CacheVariable< T > &cv) const
 Get the index of a Component's cache variable in the Subsystem for allocations. More...
 
SimTK::CacheEntryIndex getCacheVariableIndex (const std::string &name) const
 Get the index of a Component's cache variable in the Subsystem for allocations. More...
 
template<class T >
const T & getCacheVariableValue (const SimTK::State &state, const std::string &name) const
 Get the value of a cache variable allocated by this Component by name. More...
 
template<class T >
const T & getCacheVariableValue (const SimTK::State &state, const CacheVariable< T > &cv) const
 Get the value of a cache variable allocated by this Component. More...
 
template<typename T >
void setCacheVariableValue (const SimTK::State &state, const std::string &k, T value) const
 Set the value of a cache variable, identified by name, to a new value and mark the cache variable as valid. More...
 
template<typename T >
void setCacheVariableValue (const SimTK::State &state, const CacheVariable< T > &cv, T value) const
 Set the value of a cache variable to a new value and mark the cache variable as valid. More...
 
template<typename T >
T & updCacheVariableValue (const SimTK::State &state, const std::string &name) const
 Returns a mutable reference to the value of a cache variable identified by name. More...
 
template<typename T >
T & updCacheVariableValue (const SimTK::State &state, const CacheVariable< T > &cv) const
 Returns a mutable reference to the value of a cache variable. More...
 
bool isCacheVariableValid (const SimTK::State &state, const std::string &name) const
 Returns true if the cache variable, identified by name, is valid. More...
 
template<class T >
bool isCacheVariableValid (const SimTK::State &state, const CacheVariable< T > &cv) const
 Returns true if the cache variable is valid. More...
 
void markCacheVariableValid (const SimTK::State &state, const std::string &name) const
 Marks the value of a cache variable, identified by name, as valid. More...
 
template<typename T >
void markCacheVariableValid (const SimTK::State &state, const CacheVariable< T > &cv) const
 Marks the value of a cache variable as valid. More...
 
void markCacheVariableInvalid (const SimTK::State &state, const std::string &name) const
 Marks the value of a cache variable, identified by name, as invalid. More...
 
template<class T >
void markCacheVariableInvalid (const SimTK::State &state, const CacheVariable< T > &cv) const
 Marks the value of a cache variable as invalid. More...
 
const ComponentgetOwner () const
 Access the owner of this Component. More...
 
bool hasOwner () const
 (For advanced users) Check if this Component has an owner. More...
 
const ComponentgetRoot () const
 Obtain the root Component, which is this component if it is orphaned. More...
 
- Public Member Functions inherited from OpenSim::Object
virtual ~Object ()
 Virtual destructor for cleanup. More...
 
bool isEqualTo (const Object &aObject) const
 Equality operator wrapper for use from languages not supporting operator overloading. More...
 
Objectoperator= (const Object &aObject)
 Copy assignment copies he base class fields, including the properties. More...
 
virtual bool operator== (const Object &aObject) const
 Determine if two objects are equal. More...
 
virtual bool operator< (const Object &aObject) const
 Provide an ordering for objects so they can be put in sorted containers. More...
 
void setName (const std::string &name)
 Set the name of the Object. More...
 
const std::string & getName () const
 Get the name of this Object. More...
 
void setDescription (const std::string &description)
 Set description, a one-liner summary. More...
 
const std::string & getDescription () const
 Get description, a one-liner summary. More...
 
const std::string & getAuthors () const
 Get Authors of this Object. More...
 
void setAuthors (const std::string &authors)
 Set Authors of this object. More...
 
const std::string & getReferences () const
 Get references or publications to cite if using this object. More...
 
void setReferences (const std::string &references)
 Set references or publications to cite if using this object. More...
 
int getNumProperties () const
 Determine how many properties are stored with this Object. More...
 
const AbstractPropertygetPropertyByIndex (int propertyIndex) const
 Get a const reference to a property by its index number, returned as an AbstractProperty. More...
 
AbstractPropertyupdPropertyByIndex (int propertyIndex)
 Get a writable reference to a property by its index number, returned as an AbstractProperty. More...
 
bool hasProperty (const std::string &name) const
 Return true if this Object has a property of any type with the given name, which must not be empty. More...
 
const AbstractPropertygetPropertyByName (const std::string &name) const
 Get a const reference to a property by its name, returned as an AbstractProperty. More...
 
AbstractPropertyupdPropertyByName (const std::string &name)
 Get a writable reference to a property by its name, returned as an AbstractProperty. More...
 
template<class T >
bool hasProperty () const
 Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More...
 
template<class T >
const Property< T > & getProperty (const PropertyIndex &index) const
 Get property of known type Property<T> as a const reference; the property must be present and have the right type. More...
 
template<class T >
Property< T > & updProperty (const PropertyIndex &index)
 Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More...
 
bool isObjectUpToDateWithProperties () const
 Returns true if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More...
 
void readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber)
 We're given an XML element from which we are to populate this Object. More...
 
void updateXMLNode (SimTK::Xml::Element &parent, const AbstractProperty *prop=nullptr) const
 Serialize this object into the XML node that represents it. More...
 
bool getInlined () const
 Inlined means an in-memory Object that is not associated with an XMLDocument. More...
 
void setInlined (bool aInlined, const std::string &aFileName="")
 Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More...
 
std::string getDocumentFileName () const
 If there is a document associated with this object then return the file name maintained by the document. More...
 
int getDocumentFileVersion () const
 If there is a document associated with this object then return its version number. More...
 
void setAllPropertiesUseDefault (bool aUseDefault)
 
bool print (const std::string &fileName) const
 Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More...
 
std::string dump () const
 dump the XML representation of this Object into an std::string and return it. More...
 
virtual bool isA (const char *type) const
 The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More...
 
const std::string & toString () const
 Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More...
 
PropertySetgetPropertySet ()
 OBSOLETE: Get a reference to the PropertySet maintained by the Object. More...
 
const PropertySetgetPropertySet () const
 

Public Types

typedef Umberger2010MuscleMetabolicsProbe Self
 This typedef might be useful within the member functions of this class. More...
 
typedef Probe Super
 Use this typedef to refer to the superclass of this class. More...
 
typedef std::map< std::string, Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter * > MuscleMap
 MuscleMap typedef. More...
 
- Public Types inherited from OpenSim::Probe
typedef Probe Self
 This typedef might be useful within the member functions of this class. More...
 
typedef ModelComponent Super
 Use this typedef to refer to the superclass of this class. More...
 
- Public Types inherited from OpenSim::ModelComponent
typedef ModelComponent Self
 This typedef might be useful within the member functions of this class. More...
 
typedef Component Super
 Use this typedef to refer to the superclass of this class. More...
 
- Public Types inherited from OpenSim::Component
typedef Component Self
 This typedef might be useful within the member functions of this class. More...
 
typedef Object Super
 Use this typedef to refer to the superclass of this class. More...
 
typedef std::map< std::string, SimTK::ClonePtr< AbstractOutput > >::const_iterator OutputConstIterator
 Define OutputConstIterator for convenience. More...
 

Auto-generated functions

static Umberger2010MuscleMetabolicsProbesafeDownCast (OpenSim::Object *obj)
 For use in MATLAB and Python to access the concrete class. More...
 
static const std::string & getClassName ()
 This returns "Umberger2010MuscleMetabolicsProbe". More...
 
void assign (Object &aObject) override
 This allows copy assignment in the Java GUI. More...
 
Umberger2010MuscleMetabolicsProbeclone () const override
 Create a new heap-allocated copy of the concrete object to which this Object refers. More...
 
const std::string & getConcreteClassName () const override
 Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More...
 

Umberger2010MuscleMetabolicsProbe Interface

These accessor methods are to be used when setting up a new muscle metabolic analysis from the API.

The basic operation is as follows:

model.addProbe(myProbe);
myProbe->addMuscle("muscleName1", ... );
myProbe->addMuscle("muscleName2", ... );
myProbe->addMuscle("muscleName3", ... );
myProbe->useProvidedMass("muscleName1", 1.2); // muscle1 mass = 1.2 kg
myProbe->useCalculatedMass("muscleName2"); // muscle2 mass is based on muscle properties (below)
myProbe->setDensity("muscleName2", 1100.0); // muscle2 density is 1100 kg/m^3
myProbe->setSpecificTension("muscleName2", 0.26e6); // muscle2 specific tension is 0.26e6 Pa
myProbe->removeMuscle("muscleName3");
myProbe->setOperation("integrate") // See OpenSim::Probe for other operations
Note
It is important to first add the metabolic probe to the model before calling any other methods that may modify its properties. This is because some methods (e.g. addMuscle() or useCalculatedMass) may require information about the muscles to successfully execute, and this information can only be obtained if the metabolic probe is already 'connected' to the model.
int getNumMetabolicMuscles () const
 Get the number of muscles being analyzed in the metabolic analysis. More...
 
void addMuscle (const std::string &muscleName, double ratio_slow_twitch_fibers)
 Add a muscle and its parameters so that it can be included in the metabolic analysis. More...
 
void addMuscle (const std::string &muscleName, double ratio_slow_twitch_fibers, double muscle_mass)
 Add a muscle and its parameters so that it can be included in the metabolic analysis. More...
 
void removeMuscle (const std::string &muscleName)
 Remove a muscle from the metabolic analysis. More...
 
void useProvidedMass (const std::string &muscleName, double providedMass)
 Set an existing muscle to use a provided muscle mass. More...
 
void useCalculatedMass (const std::string &muscleName)
 Set an existing muscle to calculate its own mass. More...
 
bool isUsingProvidedMass (const std::string &muscleName)
 Get whether the muscle mass is being explicitly provided. More...
 
double getMuscleMass (const std::string &muscleName) const
 Get the muscle mass used in the metabolic analysis. More...
 
double getRatioSlowTwitchFibers (const std::string &muscleName) const
 Get the ratio of slow twitch fibers for an existing muscle. More...
 
void setRatioSlowTwitchFibers (const std::string &muscleName, const double &ratio)
 Set the ratio of slow twitch fibers for an existing muscle. More...
 
double getDensity (const std::string &muscleName) const
 Get the density for an existing muscle (kg/m^3). More...
 
void setDensity (const std::string &muscleName, const double &density)
 Set the density for an existing muscle (kg/m^3). More...
 
double getSpecificTension (const std::string &muscleName) const
 Get the specific tension for an existing muscle (Pascals (N/m^2)). More...
 
void setSpecificTension (const std::string &muscleName, const double &specificTension)
 Set the specific tension for an existing muscle (Pascals (N/m^2)). More...
 

Additional Inherited Members

- Static Public Member Functions inherited from OpenSim::Probe
static ProbesafeDownCast (OpenSim::Object *obj)
 For use in MATLAB and Python to access the concrete class. More...
 
static const std::string & getClassName ()
 This returns "Probe". More...
 
- Static Public Member Functions inherited from OpenSim::ModelComponent
static ModelComponentsafeDownCast (OpenSim::Object *obj)
 For use in MATLAB and Python to access the concrete class. More...
 
static const std::string & getClassName ()
 This returns "ModelComponent". More...
 
- Static Public Member Functions inherited from OpenSim::Component
static ComponentsafeDownCast (OpenSim::Object *obj)
 For use in MATLAB and Python to access the concrete class. More...
 
static const std::string & getClassName ()
 This returns "Component". More...
 
- Static Public Member Functions inherited from OpenSim::Object
static void registerType (const Object &defaultObject)
 Register an instance of a class; if the class is already registered it will be replaced. More...
 
static void renameType (const std::string &oldTypeName, const std::string &newTypeName)
 Support versioning by associating the current Object type with an old name. More...
 
static const ObjectgetDefaultInstanceOfType (const std::string &concreteClassName)
 Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. More...
 
template<class T >
static bool isObjectTypeDerivedFrom (const std::string &concreteClassName)
 Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. More...
 
static ObjectnewInstanceOfType (const std::string &concreteClassName)
 Create a new instance of the concrete Object type whose class name is given as concreteClassName. More...
 
static void getRegisteredTypenames (Array< std::string > &typeNames)
 Retrieve all the typenames registered so far. More...
 
template<class T >
static void getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray)
 Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. More...
 
static bool PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName, bool printFlagInfo=true)
 Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. More...
 
static bool PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName, bool printFlagInfo=true)
 Same as the other signature but the class name and property name are provided as two separate strings. More...
 
static ObjectmakeObjectFromFile (const std::string &fileName)
 Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. More...
 
static const std::string & getClassName ()
 Return the name of this class as a string; i.e., "Object". More...
 
static void setSerializeAllDefaults (bool shouldSerializeDefaults)
 Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. More...
 
static bool getSerializeAllDefaults ()
 Report the value of the "serialize all defaults" flag. More...
 
static bool isKindOf (const char *type)
 Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. More...
 
static void setDebugLevel (int newLevel)
 Set the amount of logging output. More...
 
static int getDebugLevel ()
 Get the current setting of debug level. More...
 
static ObjectSafeCopy (const Object *aObject)
 Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. More...
 
static void RegisterType (const Object &defaultObject)
 OBSOLETE alternate name for registerType(). More...
 
static void RenameType (const std::string &oldName, const std::string &newName)
 OBSOLETE alternate name for renameType(). More...
 
- Static Public Attributes inherited from OpenSim::Object
static const std::string DEFAULT_NAME
 Name used for default objects when they are serialized. More...
 
- Protected Member Functions inherited from OpenSim::Probe
void extendAddToSystem (SimTK::MultibodySystem &system) const override
 Concrete probes may override; be sure to invoke Super::extendAddToSystem() at the beginning of the overriding method. More...
 
- Protected Member Functions inherited from OpenSim::ModelComponent
const SimTK::Vec3 & getScaleFactors (const ScaleSet &scaleSet, const Frame &frame) const
 Get the scale factors corresponding to the base OpenSim::Body of the specified Frame. More...
 
virtual void extendPreScale (const SimTK::State &s, const ScaleSet &scaleSet)
 Perform any computations that must occur before ModelComponent::scale() is invoked on all ModelComponents in the Model. More...
 
virtual void extendScale (const SimTK::State &s, const ScaleSet &scaleSet)
 Scale the ModelComponent. More...
 
virtual void extendPostScale (const SimTK::State &s, const ScaleSet &scaleSet)
 Perform any computations that must occur after ModelComponent::scale() has been invoked on all ModelComponents in the Model. More...
 
void extendFinalizeFromProperties () override
 Perform any time-invariant calculations, data structure initializations, or other configuration based on the component's properties to form a functioning (but not yet connected) component. More...
 
- Protected Member Functions inherited from OpenSim::Component
 SimTK_DEFINE_UNIQUE_INDEX_TYPE (MemberSubcomponentIndex)
 
template<class C = Component>
MemberSubcomponentIndex constructSubcomponent (const std::string &name)
 Construct a subcomponent as a data member of this Component. More...
 
template<class C = Component>
const C & getMemberSubcomponent (MemberSubcomponentIndex ix) const
 
template<class C = Component>
C & updMemberSubcomponent (MemberSubcomponentIndex ix)
 
void adoptSubcomponent (Component *subcomponent)
 Adopt a component as a subcomponent of this Component. More...
 
size_t getNumImmediateSubcomponents () const
 Get the number of Subcomponents immediately owned by this Component. More...
 
size_t getNumMemberSubcomponents () const
 Get the number of Subcomponents that are data members of this Component. More...
 
size_t getNumPropertySubcomponents () const
 Get the number of Subcomponents that are properties of this Component. More...
 
size_t getNumAdoptedSubcomponents () const
 Get the number of Subcomponents adopted by this Component. More...
 
std::vector< SimTK::ReferencePtr< const Component > > getImmediateSubcomponents () const
 Access this Component's immediate subcomponents (not those owned by subcomponents) More...
 
template<class C >
const C * traversePathToComponent (ComponentPath path) const
 
void setNextSubcomponentInSystem (const Component &sub) const
 Helper method to enable Component makers to specify the order of their subcomponents to be added to the System during addToSystem(). More...
 
void resetSubcomponentOrder ()
 resetSubcomponentOrder clears this Component's list of ordered subcomponents (but otherwise leaves subcomponents untouched). More...
 
const Componentget_components (int i) const
 Get the value of the i-th element of the components property. More...
 
Componentupd_components (int i)
 Get a writable reference to the i-th element of the components property. More...
 
void set_components (int i, const Component &value)
 Set the value of the i-th element of components property. More...
 
int append_components (const Component &value)
 Append an element to the components property. More...
 
virtual void extendAddComponent (Component *subcomponent)
 Perform any secondary operations, e.g. More...
 
void initComponentTreeTraversal (const Component &root) const
 Build the tree of Components from this component through its descendants. More...
 
virtual void extendAddToSystemAfterSubcomponents (SimTK::MultibodySystem &system) const
 Add appropriate Simbody elements (if needed) to the System after your component's subcomponents have had a chance to add themselves to the system. More...
 
virtual void extendInitStateFromProperties (SimTK::State &state) const
 Transfer property values or other state-independent initial values into this component's state variables in the passed-in state argument. More...
 
virtual void extendSetPropertiesFromState (const SimTK::State &state)
 Update this component's property values to match the specified State, if the component has created any state variable that is intended to correspond to a property. More...
 
virtual void computeStateVariableDerivatives (const SimTK::State &s) const
 If a model component has allocated any continuous state variables using the addStateVariable() method, then computeStateVariableDerivatives() must be implemented to provide time derivatives for those states. More...
 
void setStateVariableDerivativeValue (const SimTK::State &state, const std::string &name, double deriv) const
 Set the derivative of a state variable by name when computed inside of this Component's computeStateVariableDerivatives() method. More...
 
virtual void extendRealizeTopology (SimTK::State &state) const
 Obtain state resources that are needed unconditionally, and perform computations that depend only on the system topology. More...
 
virtual void extendRealizeModel (SimTK::State &state) const
 Obtain and name state resources (like state variables allocated by an underlying Simbody component) that may be needed, depending on modeling options. More...
 
virtual void extendRealizeInstance (const SimTK::State &state) const
 Perform computations that depend only on instance variables, like lengths and masses. More...
 
virtual void extendRealizeTime (const SimTK::State &state) const
 Perform computations that depend only on time and earlier stages. More...
 
virtual void extendRealizePosition (const SimTK::State &state) const
 Perform computations that depend only on position-level state variables and computations performed in earlier stages (including time). More...
 
virtual void extendRealizeVelocity (const SimTK::State &state) const
 Perform computations that depend only on velocity-level state variables and computations performed in earlier stages (including position, and time). More...
 
virtual void extendRealizeDynamics (const SimTK::State &state) const
 Perform computations (typically forces) that may depend on dynamics-stage state variables, and on computations performed in earlier stages (including velocity, position, and time), but not on other forces, accelerations, constraint multipliers, or reaction forces. More...
 
virtual void extendRealizeAcceleration (const SimTK::State &state) const
 Perform computations that may depend on applied forces. More...
 
virtual void extendRealizeReport (const SimTK::State &state) const
 Perform computations that may depend on anything but are only used for reporting and cannot affect subsequent simulation behavior. More...
 
void addModelingOption (const std::string &optionName, int maxFlagValue) const
 Add a modeling option (integer flag stored in the State) for use by this Component. More...
 
void addStateVariable (const std::string &stateVariableName, const SimTK::Stage &invalidatesStage=SimTK::Stage::Dynamics, bool isHidden=false) const
 Add a continuous system state variable belonging to this Component, and assign a name by which to refer to it. More...
 
void addStateVariable (Component::StateVariable *stateVariable) const
 The above method provides a convenient interface to this method, which automatically creates an 'AddedStateVariable' and allocates resources in the SimTK::State for this variable. More...
 
void addDiscreteVariable (const std::string &discreteVariableName, SimTK::Stage invalidatesStage) const
 Add a system discrete variable belonging to this Component, give it a name by which it can be referenced, and declare the lowest Stage that should be invalidated if this variable's value is changed. More...
 
SimTK::MultibodySystem & updSystem () const
 Get writable reference to the MultibodySystem that this component is connected to. More...
 
int getStateIndex (const std::string &name) const
 Get the index of a Component's continuous state variable in the Subsystem for allocations. More...
 
SimTK::SystemYIndex getStateVariableSystemIndex (const std::string &stateVariableName) const
 Get the System Index of a state variable allocated by this Component. More...
 
const SimTK::DiscreteVariableIndex getDiscreteVariableIndex (const std::string &name) const
 Get the index of a Component's discrete variable in the Subsystem for allocations. More...
 
template<typename T >
PropertyIndex constructSocket (const std::string &name, const std::string &propertyComment)
 Construct a specialized Socket for this Component's dependence on another Component. More...
 
template<typename T , typename CompType = Component>
bool constructOutput (const std::string &name, T(CompType::*const memFunc)(const SimTK::State &) const, const SimTK::Stage &dependsOn=SimTK::Stage::Acceleration)
 Construct an output for a member function of the same component. More...
 
template<typename T , typename CompType = Component>
bool constructOutput (const std::string &name, const T &(CompType::*const memFunc)(const SimTK::State &) const, const SimTK::Stage &dependsOn=SimTK::Stage::Acceleration)
 This variant handles component member functions that return the output value by const reference (const T&). More...
 
template<typename T , typename CompType >
bool constructListOutput (const std::string &name, T(CompType::*const memFunc)(const SimTK::State &, const std::string &channel) const, const SimTK::Stage &dependsOn=SimTK::Stage::Acceleration)
 Construct an output that can have multiple channels. More...
 
bool constructOutputForStateVariable (const std::string &name)
 Construct an Output for a StateVariable. More...
 
template<typename T >
PropertyIndex constructInput (const std::string &name, bool isList, const std::string &propertyComment, const SimTK::Stage &requiredAtStage=SimTK::Stage::Instance)
 Construct an Input (socket) for this Component's dependence on an Output signal. More...
 
template<class T >
CacheVariable< T > addCacheVariable (std::string name, T variablePrototype, SimTK::Stage dependsOnStage) const
 Add a state cache entry belonging to this Component to hold calculated values that must be automatically invalidated when certain state values change. More...
 
void setOwner (const Component &owner)
 Set this Component's reference to its owning Component More...
 
- Protected Member Functions inherited from OpenSim::Object
 Object ()
 The default constructor is only for use by constructors of derived types. More...
 
 Object (const std::string &fileName, bool aUpdateFromXMLNode=true)
 Constructor from a file, to be called from other constructors that take a file as input. More...
 
 Object (const Object &source)
 Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. More...
 
 Object (SimTK::Xml::Element &aElement)
 Construct the base class portion of an Object from a given Xml element that describes this Object. More...
 
template<class T >
PropertyIndex addProperty (const std::string &name, const std::string &comment, const T &value)
 Define a new single-value property of known type T, with the given name, associated comment, and initial value. More...
 
template<class T >
PropertyIndex addOptionalProperty (const std::string &name, const std::string &comment)
 Add an optional property, meaning it can contain either no value or a single value. More...
 
template<class T >
PropertyIndex addOptionalProperty (const std::string &name, const std::string &comment, const T &value)
 Add an optional property, meaning it can contain either no value or a single value. More...
 
template<class T >
PropertyIndex addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize)
 Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. More...
 
template<class T , template< class > class Container>
PropertyIndex addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList)
 Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. More...
 
PropertyIndex getPropertyIndex (const std::string &name) const
 Look up a property by name and return its PropertyIndex if it is found. More...
 
template<class T >
PropertyIndex getPropertyIndex () const
 Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. More...
 
template<class T >
void checkPropertyValueIsPositive (const Property< T > &p) const
 Throw an exception if any of the property's values are not positive. More...
 
template<class T >
void checkPropertyValueIsInSet (const Property< T > &p, const std::set< T > &set) const
 Throw an exception if any of the property's values are not in the provided set. More...
 
template<class T >
void checkPropertyValueIsInRangeOrSet (const Property< T > &p, const T &lower, const T &upper, const std::set< T > &set) const
 Throw an exception if any of the property's values are neither in the provided range nor in the provided set. More...
 
void setObjectIsUpToDateWithProperties ()
 When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. More...
 
void clearObjectIsUpToDateWithProperties ()
 For testing or debugging purposes, manually clear the "object is up to date with respect to properties" flag. More...
 
void makeObjectNamesConsistentWithProperties ()
 Make sure the name of an object is consistent with its property type. More...
 
void updateFromXMLDocument ()
 Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. More...
 
void setDocument (XMLDocument *doc)
 Unconditionally set the XMLDocument associated with this object. More...
 
const XMLDocumentgetDocument () const
 Get a const pointer to the document (if any) associated with this object. More...
 
XMLDocumentupdDocument ()
 Get a writable pointer to the document (if any) associated with this object. More...
 
- Static Protected Member Functions inherited from OpenSim::Component
static void prependComponentPathToConnecteePath (Component &subcomponent)
 For internal use. More...
 
- Protected Attributes inherited from OpenSim::ModelComponent
SimTK::ReferencePtr< Model_model
 The model this component belongs to. More...
 
- Protected Attributes inherited from OpenSim::Object
PropertySet _propertySet
 OBSOLETE: Property_Deprecated set for serializable member variables of this and derived classes. More...
 
- Static Protected Attributes inherited from OpenSim::ModelComponent
static const SimTK::Vec3 InvalidScaleFactors
 Returned by getScaleFactors() if the ScaleSet does not contain scale factors for the base Body associated with the specified Frame. More...
 

Detailed Description

Umberger2010MuscleMetabolicsProbe is a Probe ModelComponent for computing the net metabolic energy rate of a set of Muscles in the model during a simulation.

Umberger2010MuscleMetabolicsProbe Theory

The discussion here is based on the following papers:

Uchida, T. K., Hicks, J. L., Dembia, C. L., Delp, S. L. (2016). Stretching your energetic budget: how tendon compliance affects the metabolic cost of running. PLOS ONE 11(3), e0150378.

Umberger, B. R. (2010). Stance and swing phase costs in human walking. J R Soc Interface 7, 1329-40.

Umberger, B. R., Gerritsen, K. G. and Martin, P. E. (2003). A model of human muscle energy expenditure. Comput Methods Biomech Biomed Engin 6, 99-111.

Note that the equations below that describe the particular implementation of Umberger2010MuscleMetabolicsProbe may slightly differ from the equations described in the representative publications above. Note also that we define positive muscle velocity to indicate lengthening (eccentric contraction) and negative muscle velocity to indicate shortening (concentric contraction).

Muscle metabolic power (or rate of metabolic energy consumption) is equal to the rate at which heat is liberated plus the rate at which work is done:
Edot = Bdot + sumOfAllMuscles(Adot + Mdot + Sdot + Wdot).

  • Bdot is the basal heat rate (W).
  • Adot is the activation heat rate (W).
  • Mdot is the maintenance heat rate (W).
  • Sdot is the shortening heat rate (W).
  • Wdot is the mechanical work rate (W).

This probe also uses muscle parameters stored in the MetabolicMuscle object for each muscle. The full set of all MetabolicMuscles (MetabolicMuscleSet) is a property of this probe:

  • m = The mass of the muscle (kg).
  • r = Ratio of slow-twitch fibers in the muscle (between 0 and 1).

The recruitment model described by Bhargava et al. (2004) is used to set the slow-twitch fiber ratio used in the calculations below. The ratio specified by the user indicates the composition of the muscle; this value is used only at full excitation (i.e., when all fibers are recruited). As excitation decreases from 1 to 0, the proportion of recruited fibers that are slow-twitch fibers increases from r to 1. See Bhargava, L.J., Pandy, M.G., Anderson, F.C. (2004) A phenomenological model for estimating metabolic energy consumption in muscle contraction. J Biomech 37:81-88 and Uchida et al. (2016). To assume a constant ratio of slow- and fast-twitch fiber recruitment, set the 'use_Bhargava_recruitment_model' property to false.

BASAL HEAT RATE (W)

If basal_rate_on is set to true, then Bdot is calculated as follows:
Bdot = basal_coefficient * (m_body^basal_exponent)

  • m_body = mass of the entire model
  • basal_coefficient and basal_exponent are defined by their respective properties.
    Note that this quantity is muscle independent. Rather it is calculated on a whole body level.

ACTIVATION & MAINTENANCE HEAT RATE (W)

If activation_maintenance_rate_on is set to true, then Adot+Mdot is calculated as follows:
Adot+Mdot = [128*(1-r) + 25] * A^0.6 * S , l_CE <= l_CE_opt
Adot+Mdot = (0.4*[128*(1-r) + 25] + 0.6*[128*(1-r) + 25]*F_CE_iso) * A^0.6 * S , l_CE > l_CE_opt

  • A = u , u > a
  • A = (u+a)/2 , u <= a
  • m = The mass of the muscle (kg).
  • l_CE = muscle fiber length at the current time.
  • l_CE_opt = optimal fiber length of the muscle.
  • F_CE_iso = normalized contractile element force-length curve.
  • u = muscle excitation at the current time.
  • a = muscle activation at the current time.
  • S = aerobic/anaerobic scaling factor, defined by the 'aerobic_factor' property (i.e. usually 1.0 for primarily anaerobic activities, 1.5 for primarily aerobic activities).

SHORTENING HEAT RATE (W)

If shortening_rate_on is set to true, then Sdot is calculated as follows:
Sdot = m * (-[(alphaS_slow * v_CE_norm * r) + (alphaS_fast * v_CE_norm * (1-r))] * A^2 * S) , l_CE <= l_CE_opt & v_CE >= 0 (concentric / isometric contraction)
Sdot = m * (-[(alphaS_slow * v_CE_norm * r) + (alphaS_fast * v_CE_norm * (1-r))] * A^2 * S * F_iso) , l_CE > l_CE_opt & v_CE >= 0 (concentric / isometric contraction)
Sdot = m * (alphaL * v_CE_norm * A * S) , l_CE <= l_CE_opt & v_CE < 0 (eccentric contraction)
Sdot = m * (alphaL * v_CE_norm * A * S * F_CE_iso) , l_CE > l_CE_opt & v_CE < 0 (eccentric contraction)

  • A = u , u > a
  • A = (u+a)/2 , u <= a
  • alphaS_fast = 153 / v_CE_max
  • alphaS_slow = 100 / (v_CE_max / 2.5)
  • alphaL = 4.0 * alphaS_slow
  • m = The mass of the muscle (kg).
  • l_CE = muscle fiber length at the current time.
  • l_CE_opt = optimal fiber length of the muscle.
  • F_CE_iso = force that would be developed by the contractile element of muscle under isometric conditions with the current activation and fiber length.
  • v_CE = muscle fiber velocity at the current time.
  • v_CE_max = maximum shortening velocity of the muscle.
  • v_CE_norm = normalized muscle fiber velocity (defined for this model as v_CE/l_CE_opt). Note that this is a different metric to the typical normalized_muscle_fiber_velocity of v_CE/v_CE_max.
  • S = aerobic/anaerobic scaling factor, defined by the 'aerobic_factor' property (i.e. usually 1.0 for primarily anaerobic activities, 1.5 for primarily aerobic activities).

MECHANICAL WORK RATE (W)

If mechanical_work_rate_on is set to true, then Wdot is calculated as follows:
Wdot = -(F_CE * v_CE)

  • v_CE = muscle fiber velocity at the current time.
  • F_CE = force developed by the contractile element of muscle at the current time.
    If we draw a control volume around the fiber, the first law of thermodynamics suggests that negative mechanical work should be included in Wdot. As such, we revert back to the model described in Umberger et al. (2003) by default. To exclude negative mechanical work from Wdot and use a coefficient of 0.3 (rather than 4.0) to calculate alpha_L, set the 'include_negative_mechanical_work' property to false.

During eccentric contraction, the magnitude of the (negative) mechanical work rate can exceed that of the total (positive) heat rate, resulting in a flow of energy into the fiber. Experiments indicate that the chemical processes involved in fiber contraction cannot be reversed, and most of the energy that is absorbed during eccentric contraction (in increased cross-bridge potentials, for example) is eventually converted into heat. Thus, we increase Sdot (if necessary) to ensure Edot > 0 for each muscle. See Constable, J.K., Barclay, C.J., Gibbs, C.L. (1997) Energetics of lengthening in mouse and toad skeletal muscles. J Physiol 505:205-215 and Uchida et al. (2016). To allow muscles to have negative total power, set the 'forbid_negative_total_power' property to false.

Note that if enforce_minimum_heat_rate_per_muscle == true AND activation_maintenance_rate_on == shortening_rate_on == true, then the total heat rate (AMdot + Sdot) will be capped to a minimum value of 1.0 W/kg (Umberger(2003), page 104).

Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter

Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter is an Object class that holds the metabolic parameters required to calculate metabolic power for a single muscle.

Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter Properties

REQUIRED PROPERTIES

  • specific_tension = The specific tension of the muscle (Pascals (N/m^2)).
  • density = The density of the muscle (kg/m^3).
  • ratio_slow_twitch_fibers = Ratio of slow twitch fibers in the muscle (must be between 0 and 1).

OPTIONAL PROPERTIES

  • use_provided_muscle_mass = An optional flag that allows the user to explicitly specify a muscle mass. If set to true, the 'provided_muscle_mass' property must be specified. The default setting is false, in which case, the muscle mass is calculated from the following formula: m = (Fmax/specific_tension)*density*Lm_opt, where specific_tension and density are properties defined above (note that their default values are set based on mammalian muscle, 0.25e6 N/m^2 and 1059.7 kg/m^3, respectively); Fmax and Lm_opt are the maximum isometric force and optimal fiber length, respectively, of the muscle.
  • provided_muscle_mass = The user specified muscle mass (kg).
Author
Tim Dorn
Examples:
exampleHangingMuscle.cpp.

Member Typedef Documentation

◆ MuscleMap

◆ Self

This typedef might be useful within the member functions of this class.

This is generated by the OpenSim_DECLARE_*_OBJECT macros.

◆ Super

Use this typedef to refer to the superclass of this class.

Avoid using the explicit type name of the superclass; this would introduce bugs if the superclass is changed.

This is generated by the OpenSim_DECLARE_*_OBJECT macros.

Constructor & Destructor Documentation

◆ Umberger2010MuscleMetabolicsProbe() [1/2]

OpenSim::Umberger2010MuscleMetabolicsProbe::Umberger2010MuscleMetabolicsProbe ( )

Default constructor.

◆ Umberger2010MuscleMetabolicsProbe() [2/2]

OpenSim::Umberger2010MuscleMetabolicsProbe::Umberger2010MuscleMetabolicsProbe ( const bool  activation_maintenance_rate_on,
const bool  shortening_rate_on,
const bool  basal_rate_on,
const bool  work_rate_on 
)

Convenience constructor.

Member Function Documentation

◆ addMuscle() [1/2]

void OpenSim::Umberger2010MuscleMetabolicsProbe::addMuscle ( const std::string &  muscleName,
double  ratio_slow_twitch_fibers 
)

Add a muscle and its parameters so that it can be included in the metabolic analysis.

◆ addMuscle() [2/2]

void OpenSim::Umberger2010MuscleMetabolicsProbe::addMuscle ( const std::string &  muscleName,
double  ratio_slow_twitch_fibers,
double  muscle_mass 
)

Add a muscle and its parameters so that it can be included in the metabolic analysis.

◆ assign()

void OpenSim::Umberger2010MuscleMetabolicsProbe::assign ( Object aObject)
inlineoverride

This allows copy assignment in the Java GUI.

Exceptions
Exceptionif the argument is not of type Umberger2010MuscleMetabolicsProbe.

◆ clone()

Umberger2010MuscleMetabolicsProbe* OpenSim::Umberger2010MuscleMetabolicsProbe::clone ( ) const
inlineoverridevirtual

Create a new heap-allocated copy of the concrete object to which this Object refers.

It is up to the caller to delete the returned object when no longer needed. Every concrete object deriving from Object implements this pure virtual method automatically, via the declaration macro it invokes (e.g., OpenSim_DECLARE_CONCRETE_OBJECT()). Note that the concrete class overrides modify the return type to be a pointer to the concrete object; that still overrides the base class method because the return type is covariant with (that is, derives from) Object.

Implements OpenSim::Probe.

◆ computeProbeInputs()

virtual SimTK::Vector OpenSim::Umberger2010MuscleMetabolicsProbe::computeProbeInputs ( const SimTK::State &  state) const
overridevirtual

Compute muscle metabolic power.

Implements OpenSim::Probe.

◆ get_activation_maintenance_rate_on()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_activation_maintenance_rate_on ( ) const
inline

Get the value of the activation_maintenance_rate_on property.

◆ get_aerobic_factor()

const double& OpenSim::Umberger2010MuscleMetabolicsProbe::get_aerobic_factor ( ) const
inline

Get the value of the aerobic_factor property.

◆ get_basal_coefficient()

const double& OpenSim::Umberger2010MuscleMetabolicsProbe::get_basal_coefficient ( ) const
inline

Get the value of the basal_coefficient property.

◆ get_basal_exponent()

const double& OpenSim::Umberger2010MuscleMetabolicsProbe::get_basal_exponent ( ) const
inline

Get the value of the basal_exponent property.

◆ get_basal_rate_on()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_basal_rate_on ( ) const
inline

Get the value of the basal_rate_on property.

◆ get_enforce_minimum_heat_rate_per_muscle()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_enforce_minimum_heat_rate_per_muscle ( ) const
inline

Get the value of the enforce_minimum_heat_rate_per_muscle property.

◆ get_forbid_negative_total_power()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_forbid_negative_total_power ( ) const
inline

Get the value of the forbid_negative_total_power property.

◆ get_include_negative_mechanical_work()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_include_negative_mechanical_work ( ) const
inline

Get the value of the include_negative_mechanical_work property.

◆ get_mechanical_work_rate_on()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_mechanical_work_rate_on ( ) const
inline

Get the value of the mechanical_work_rate_on property.

◆ get_muscle_effort_scaling_factor()

const double& OpenSim::Umberger2010MuscleMetabolicsProbe::get_muscle_effort_scaling_factor ( ) const
inline

Get the value of the muscle_effort_scaling_factor property.

◆ get_report_total_metabolics_only()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_report_total_metabolics_only ( ) const
inline

Get the value of the report_total_metabolics_only property.

◆ get_shortening_rate_on()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_shortening_rate_on ( ) const
inline

Get the value of the shortening_rate_on property.

◆ get_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet()

const Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet& OpenSim::Umberger2010MuscleMetabolicsProbe::get_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet ( ) const
inline

Get the value of the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property.

◆ get_use_Bhargava_recruitment_model()

const bool& OpenSim::Umberger2010MuscleMetabolicsProbe::get_use_Bhargava_recruitment_model ( ) const
inline

Get the value of the use_Bhargava_recruitment_model property.

◆ getClassName()

static const std::string& OpenSim::Umberger2010MuscleMetabolicsProbe::getClassName ( )
inlinestatic

This returns "Umberger2010MuscleMetabolicsProbe".

See getConcreteClassName() if you want the class name of the underlying concrete object instead.

This is generated by the OpenSim_DECLARE_*_OBJECT macros.

◆ getConcreteClassName()

const std::string& OpenSim::Umberger2010MuscleMetabolicsProbe::getConcreteClassName ( ) const
inlineoverridevirtual

Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string.

This is the string that is used as the tag for this concrete object in an XML file. Every concrete class derived from Object automatically overrides this method via the declaration macro it uses. See getClassName() to get the class name of the referencing (possibly abstract) class rather than the concrete object.

See also
getClassName()

Implements OpenSim::Probe.

◆ getDensity()

double OpenSim::Umberger2010MuscleMetabolicsProbe::getDensity ( const std::string &  muscleName) const

Get the density for an existing muscle (kg/m^3).

◆ getMuscleMass()

double OpenSim::Umberger2010MuscleMetabolicsProbe::getMuscleMass ( const std::string &  muscleName) const

Get the muscle mass used in the metabolic analysis.

The value returned will depend on if the muscle mass is explicitly provided (i.e. isUsingProvidedMass = true), or if it is being automatically calculated from muscle data already present in the model (i.e. isUsingProvidedMass = true).

◆ getNumMetabolicMuscles()

int OpenSim::Umberger2010MuscleMetabolicsProbe::getNumMetabolicMuscles ( ) const

Get the number of muscles being analyzed in the metabolic analysis.

◆ getNumProbeInputs()

int OpenSim::Umberger2010MuscleMetabolicsProbe::getNumProbeInputs ( ) const
overridevirtual

Returns the number of probe inputs in the vector returned by computeProbeInputs().

Implements OpenSim::Probe.

◆ getProbeOutputLabels()

virtual OpenSim::Array<std::string> OpenSim::Umberger2010MuscleMetabolicsProbe::getProbeOutputLabels ( ) const
overridevirtual

Returns the column labels of the probe values for reporting.

Currently uses the Probe name as the column label, so be sure to name your probe appropriately!

Implements OpenSim::Probe.

◆ getRatioSlowTwitchFibers()

double OpenSim::Umberger2010MuscleMetabolicsProbe::getRatioSlowTwitchFibers ( const std::string &  muscleName) const

Get the ratio of slow twitch fibers for an existing muscle.

◆ getSpecificTension()

double OpenSim::Umberger2010MuscleMetabolicsProbe::getSpecificTension ( const std::string &  muscleName) const

Get the specific tension for an existing muscle (Pascals (N/m^2)).

◆ isUsingProvidedMass()

bool OpenSim::Umberger2010MuscleMetabolicsProbe::isUsingProvidedMass ( const std::string &  muscleName)

Get whether the muscle mass is being explicitly provided.

True means that it is using the property 'provided_muscle_mass' False means that the muscle mass is being calculated from muscle properties.

◆ removeMuscle()

void OpenSim::Umberger2010MuscleMetabolicsProbe::removeMuscle ( const std::string &  muscleName)

Remove a muscle from the metabolic analysis.

◆ safeDownCast()

static Umberger2010MuscleMetabolicsProbe* OpenSim::Umberger2010MuscleMetabolicsProbe::safeDownCast ( OpenSim::Object obj)
inlinestatic

For use in MATLAB and Python to access the concrete class.

Example: cObj = Umberger2010MuscleMetabolicsProbe.safeDownCast(obj). This is equivalent to dynamic_cast<Umberger2010MuscleMetabolicsProbe*>(obj) in C++.

◆ set_activation_maintenance_rate_on()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_activation_maintenance_rate_on ( const bool &  value)
inline

Set the value of the activation_maintenance_rate_on property.

◆ set_aerobic_factor()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_aerobic_factor ( const double &  value)
inline

Set the value of the aerobic_factor property.

◆ set_basal_coefficient()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_basal_coefficient ( const double &  value)
inline

Set the value of the basal_coefficient property.

◆ set_basal_exponent()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_basal_exponent ( const double &  value)
inline

Set the value of the basal_exponent property.

◆ set_basal_rate_on()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_basal_rate_on ( const bool &  value)
inline

Set the value of the basal_rate_on property.

◆ set_enforce_minimum_heat_rate_per_muscle()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_enforce_minimum_heat_rate_per_muscle ( const bool &  value)
inline

Set the value of the enforce_minimum_heat_rate_per_muscle property.

◆ set_forbid_negative_total_power()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_forbid_negative_total_power ( const bool &  value)
inline

Set the value of the forbid_negative_total_power property.

◆ set_include_negative_mechanical_work()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_include_negative_mechanical_work ( const bool &  value)
inline

Set the value of the include_negative_mechanical_work property.

◆ set_mechanical_work_rate_on()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_mechanical_work_rate_on ( const bool &  value)
inline

Set the value of the mechanical_work_rate_on property.

◆ set_muscle_effort_scaling_factor()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_muscle_effort_scaling_factor ( const double &  value)
inline

Set the value of the muscle_effort_scaling_factor property.

◆ set_report_total_metabolics_only()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_report_total_metabolics_only ( const bool &  value)
inline

Set the value of the report_total_metabolics_only property.

◆ set_shortening_rate_on()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_shortening_rate_on ( const bool &  value)
inline

Set the value of the shortening_rate_on property.

◆ set_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet ( const Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet value)
inline

Set the value of the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property.

◆ set_use_Bhargava_recruitment_model()

void OpenSim::Umberger2010MuscleMetabolicsProbe::set_use_Bhargava_recruitment_model ( const bool &  value)
inline

Set the value of the use_Bhargava_recruitment_model property.

◆ setDensity()

void OpenSim::Umberger2010MuscleMetabolicsProbe::setDensity ( const std::string &  muscleName,
const double &  density 
)

Set the density for an existing muscle (kg/m^3).

◆ setRatioSlowTwitchFibers()

void OpenSim::Umberger2010MuscleMetabolicsProbe::setRatioSlowTwitchFibers ( const std::string &  muscleName,
const double &  ratio 
)

Set the ratio of slow twitch fibers for an existing muscle.

◆ setSpecificTension()

void OpenSim::Umberger2010MuscleMetabolicsProbe::setSpecificTension ( const std::string &  muscleName,
const double &  specificTension 
)

Set the specific tension for an existing muscle (Pascals (N/m^2)).

◆ upd_activation_maintenance_rate_on()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_activation_maintenance_rate_on ( )
inline

Get a writable reference to the activation_maintenance_rate_on property.

◆ upd_aerobic_factor()

double& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_aerobic_factor ( )
inline

Get a writable reference to the aerobic_factor property.

◆ upd_basal_coefficient()

double& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_basal_coefficient ( )
inline

Get a writable reference to the basal_coefficient property.

◆ upd_basal_exponent()

double& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_basal_exponent ( )
inline

Get a writable reference to the basal_exponent property.

◆ upd_basal_rate_on()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_basal_rate_on ( )
inline

Get a writable reference to the basal_rate_on property.

◆ upd_enforce_minimum_heat_rate_per_muscle()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_enforce_minimum_heat_rate_per_muscle ( )
inline

Get a writable reference to the enforce_minimum_heat_rate_per_muscle property.

◆ upd_forbid_negative_total_power()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_forbid_negative_total_power ( )
inline

Get a writable reference to the forbid_negative_total_power property.

◆ upd_include_negative_mechanical_work()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_include_negative_mechanical_work ( )
inline

Get a writable reference to the include_negative_mechanical_work property.

◆ upd_mechanical_work_rate_on()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_mechanical_work_rate_on ( )
inline

Get a writable reference to the mechanical_work_rate_on property.

◆ upd_muscle_effort_scaling_factor()

double& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_muscle_effort_scaling_factor ( )
inline

Get a writable reference to the muscle_effort_scaling_factor property.

◆ upd_report_total_metabolics_only()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_report_total_metabolics_only ( )
inline

Get a writable reference to the report_total_metabolics_only property.

◆ upd_shortening_rate_on()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_shortening_rate_on ( )
inline

Get a writable reference to the shortening_rate_on property.

◆ upd_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet()

Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet ( )
inline

Get a writable reference to the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet property.

◆ upd_use_Bhargava_recruitment_model()

bool& OpenSim::Umberger2010MuscleMetabolicsProbe::upd_use_Bhargava_recruitment_model ( )
inline

Get a writable reference to the use_Bhargava_recruitment_model property.

◆ useCalculatedMass()

void OpenSim::Umberger2010MuscleMetabolicsProbe::useCalculatedMass ( const std::string &  muscleName)

Set an existing muscle to calculate its own mass.

◆ useProvidedMass()

void OpenSim::Umberger2010MuscleMetabolicsProbe::useProvidedMass ( const std::string &  muscleName,
double  providedMass 
)

Set an existing muscle to use a provided muscle mass.

OpenSim Property, Socket, Output, Input Documentation

◆ activation_maintenance_rate_on

bool OpenSim::Umberger2010MuscleMetabolicsProbe::activation_maintenance_rate_on

"Specify whether activation & maintenance heat rate is to be calculated (true/false)."

This property appears in XML files under the tag <activation_maintenance_rate_on>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_activation_maintenance_rate_on(), upd_activation_maintenance_rate_on(), set_activation_maintenance_rate_on()

◆ aerobic_factor

double OpenSim::Umberger2010MuscleMetabolicsProbe::aerobic_factor

"Aerobic scale factor (S=1.0 for primarily anaerobic conditions and S=1.5 " "for primarily aerobic conditions. See Umberger et al., (2003)."

This property appears in XML files under the tag <aerobic_factor>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_aerobic_factor(), upd_aerobic_factor(), set_aerobic_factor()

◆ basal_coefficient

double OpenSim::Umberger2010MuscleMetabolicsProbe::basal_coefficient

"Basal metabolic coefficient."

This property appears in XML files under the tag <basal_coefficient>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_basal_coefficient(), upd_basal_coefficient(), set_basal_coefficient()

◆ basal_exponent

double OpenSim::Umberger2010MuscleMetabolicsProbe::basal_exponent

"Basal metabolic exponent."

This property appears in XML files under the tag <basal_exponent>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_basal_exponent(), upd_basal_exponent(), set_basal_exponent()

◆ basal_rate_on

bool OpenSim::Umberger2010MuscleMetabolicsProbe::basal_rate_on

"Specify whether basal heat rate is to be calculated (true/false)."

This property appears in XML files under the tag <basal_rate_on>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_basal_rate_on(), upd_basal_rate_on(), set_basal_rate_on()

◆ enforce_minimum_heat_rate_per_muscle

bool OpenSim::Umberger2010MuscleMetabolicsProbe::enforce_minimum_heat_rate_per_muscle

"Specify whether the total heat rate for a muscle will be clamped to a " "minimum value of 1.0 W/kg (true/false)."

This property appears in XML files under the tag <enforce_minimum_heat_rate_per_muscle>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_enforce_minimum_heat_rate_per_muscle(), upd_enforce_minimum_heat_rate_per_muscle(), set_enforce_minimum_heat_rate_per_muscle()

◆ forbid_negative_total_power

bool OpenSim::Umberger2010MuscleMetabolicsProbe::forbid_negative_total_power

"Specify whether the total power for each muscle must remain positive " "(true/false). Disable to use the model as published in Umberger " "(2010)."

This property appears in XML files under the tag <forbid_negative_total_power>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_forbid_negative_total_power(), upd_forbid_negative_total_power(), set_forbid_negative_total_power()

◆ include_negative_mechanical_work

bool OpenSim::Umberger2010MuscleMetabolicsProbe::include_negative_mechanical_work

"Specify whether negative mechanical work will be included in Wdot and " "a coefficient of 4.0 will be used to calculate alpha_L (true/false). " "Disable to use the model as published in Umberger (2010)."

This property appears in XML files under the tag <include_negative_mechanical_work>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_include_negative_mechanical_work(), upd_include_negative_mechanical_work(), set_include_negative_mechanical_work()

◆ mechanical_work_rate_on

bool OpenSim::Umberger2010MuscleMetabolicsProbe::mechanical_work_rate_on

"Specify whether mechanical work rate is to be calculated (true/false)."

This property appears in XML files under the tag <mechanical_work_rate_on>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_mechanical_work_rate_on(), upd_mechanical_work_rate_on(), set_mechanical_work_rate_on()

◆ muscle_effort_scaling_factor

double OpenSim::Umberger2010MuscleMetabolicsProbe::muscle_effort_scaling_factor

"Scale the excitation and activation values used by the probe to " "compensate for solutions with excessive coactivation (e.g., when a " "suboptimal tracking strategy is used)."

This property appears in XML files under the tag <muscle_effort_scaling_factor>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_muscle_effort_scaling_factor(), upd_muscle_effort_scaling_factor(), set_muscle_effort_scaling_factor()

◆ report_total_metabolics_only

bool OpenSim::Umberger2010MuscleMetabolicsProbe::report_total_metabolics_only

"If set to false, the individual muscle metabolics, basal rate, and " "total summation will be reported. If set to true, only the total " "summation will be reported."

This property appears in XML files under the tag <report_total_metabolics_only>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_report_total_metabolics_only(), upd_report_total_metabolics_only(), set_report_total_metabolics_only()

◆ shortening_rate_on

bool OpenSim::Umberger2010MuscleMetabolicsProbe::shortening_rate_on

"Specify whether shortening heat rate is to be calculated (true/false)."

This property appears in XML files under the tag <shortening_rate_on>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_shortening_rate_on(), upd_shortening_rate_on(), set_shortening_rate_on()

◆ Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet

Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet OpenSim::Umberger2010MuscleMetabolicsProbe::Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet

"A set containing, for each muscle, the parameters " "required to calculate muscle metabolic power."

This property appears in XML files under the tag <Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet>. This property was generated with the OpenSim_DECLARE_UNNAMED_PROPERTY macro; see Property to learn about the property system.

See also
get_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet(), upd_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet(), set_Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet()

◆ use_Bhargava_recruitment_model

bool OpenSim::Umberger2010MuscleMetabolicsProbe::use_Bhargava_recruitment_model

"Specify whether the recruitment model described by Bhargava et al. " "(2004) will used to determine the slow-twitch fiber ratio " "(true/false). Disable to use the model as published in Umberger " "(2010)."

This property appears in XML files under the tag <use_Bhargava_recruitment_model>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.

See also
get_use_Bhargava_recruitment_model(), upd_use_Bhargava_recruitment_model(), set_use_Bhargava_recruitment_model()

The documentation for this class was generated from the following file: