| AnalyticGeometry.h [code] | This is the client-side interface to analytic geometry suitable for using to generate mass properties, collisions, etc |
| Array.h [code] | |
| AtomicInteger.h [code] | |
| AtomSubsystem.h [code] | |
| basics.h [code] | Includes internal headers providing declarations for the basic SimTK Core classes |
| BigMatrix.h [code] | This file defines the client side of the SimTK::Matrix classes, which hold medium to large, variable-sized matrices whose elements are packed SimTK "Composite Numerical Types" (CNTs) |
| Biotype.h [code] | |
| Body.h [code] | This defines the Body class, which represents a reference frame which can be used to describe mass properties and geometry |
| bondGeometry.h [code] | |
| Clonable.h [code] | |
| CollisionDetectionAlgorithm.h [code] | |
| molmodel/internal/common.h [code] | Every Molmodel header and source file should include this header before any other Molmodel header |
| simbody/internal/common.h [code] | Every Simbody header and source file should include this header before any other Simbody header |
| simmath/internal/common.h [code] | This is the header file that user code should include to pick up the SimTK Simmath numerical differentiation tools |
| SimTKcommon/internal/common.h [code] | Mandatory first inclusion for any SimTK source or header file |
| CompositeNumericalTypes.h [code] | The purpose of the CNT<T> class is to hide the differences between built-in numerical types and composite ones like Vec<3> |
| Compound.h [code] | |
| CompoundModeler.h [code] | |
| CompoundSystem.h [code] | |
| Concretize.h [code] | |
| conjugate.h [code] | This file defines the conjugate<R> template class, where R is one of the three built-in real types |
| Constants.h [code] | This header is the common gathering place for numerical, *machine-independent* constants in SimTK |
| Constraint.h [code] | This defines the Constraint class, which is used to specify limitations on the mobility of the MobilizedBodies in a MatterSubsystem |
| Contact.h [code] | |
| ContactGeometry.h [code] | |
| ContactGeometryImpl.h [code] | |
| ContactImpl.h [code] | |
| CoordinateAxis.h [code] | |
| cpodes.h [code] | |
| cpodes_band.h [code] | |
| cpodes_bandpre.h [code] | |
| cpodes_bbdpre.h [code] | |
| cpodes_dense.h [code] | |
| cpodes_direct.h [code] | |
| cpodes_lapack.h [code] | |
| cpodes_lapack_exports.h [code] | |
| cpodes_spbcgs.h [code] | |
| cpodes_spgmr.h [code] | |
| cpodes_spils.h [code] | |
| cpodes_sptfqmr.h [code] | |
| CPodesIntegrator.h [code] | |
| cvodes.h [code] | |
| cvodes_band.h [code] | |
| cvodes_bandpre.h [code] | |
| cvodes_bbdpre.h [code] | |
| cvodes_dense.h [code] | |
| cvodes_diag.h [code] | |
| cvodes_direct.h [code] | |
| cvodes_lapack.h [code] | |
| cvodes_spbcgs.h [code] | |
| cvodes_spgmr.h [code] | |
| cvodes_spils.h [code] | |
| cvodes_sptfqmr.h [code] | |
| DecorationSubsystem.h [code] | Define the public interface to DecorationSubsystem, a "do nothing" subsystem providing a place for a MultibodySystem Modeler to toss in some visuals which may optionally be displayed by an application which uses that System |
| DecorativeGeometry.h [code] | This is the client-side interface to an implementation-independent representation of "Decorations" suitable for visualization, annotation, logging, or debugging but which cannot have any effect on the behavior of a System or the evolution of a Study |
| Differentiator.h [code] | This is the header file that user code should include to pick up the SimTK Simmath numerical differentiation tools |
| doxygen_mainpage | |
| DuMMForceFieldSubsystem.h [code] | Define the public interface to DuMMForceFieldSubsystem, a subsystem which provides some minimal molecular mechanics-like capability in a multi-rigid body framework |
| ElasticFoundationForce.h [code] | |
| Element.h [code] | |
| Enumeration.h [code] | |
| Event.h [code] | This file declares the types needed for SimTK's support for Events |
| EventHandler.h [code] | |
| EventReporter.h [code] | |
| Exception.h [code] | |
| ExceptionMacros.h [code] | This file contains macros which are convenient to use for sprinkling error checking around liberally in SimTK programs, a practice which is highly encouraged |
| ExplicitEulerIntegrator.h [code] | |
| Force.h [code] | |
| Force_LinearBushing.h [code] | This contains the user-visible API ("handle" class) for the SimTK::Force subclass Force::LinearBushing and is logically part of Force.h |
| Force_Thermostat.h [code] | This contains the user-visible API ("handle" class) for the SimTK::Force subclass Force::Thermostat and is logically part of Force.h |
| ForceSubsystem.h [code] | |
| ForceSubsystemGuts.h [code] | Define the extendible library-side implementation of the ForceSubsystem |
| Fortran.h [code] | This header defines a set of macros which are useful for making calls to Fortran routines from C++ programs |
| Function.h [code] | |
| GCVSPLUtil.h [code] | |
| GeneralContactSubsystem.h [code] | |
| GeneralForceSubsystem.h [code] | |
| GrinPointer.h [code] | |
| HuntCrossleyContact.h [code] | Define the public interface to HuntCrossleyContact, a subsystem which provides some minimal contact behavior |
| HuntCrossleyForce.h [code] | |
| ida.h [code] | |
| ida_band.h [code] | |
| ida_bbdpre.h [code] | |
| ida_dense.h [code] | |
| ida_direct.h [code] | |
| ida_lapack.h [code] | |
| ida_spbcgs.h [code] | |
| ida_spgmr.h [code] | |
| ida_spils.h [code] | |
| ida_sptfqmr.h [code] | |
| Integrator.h [code] | This is the header file that user code should include to pick up the SimTK Simmath numerical integration tools |
| Ions.h [code] | |
| kinsol.h [code] | |
| kinsol_band.h [code] | |
| kinsol_bbdpre.h [code] | |
| kinsol_dense.h [code] | |
| kinsol_direct.h [code] | |
| kinsol_lapack.h [code] | |
| kinsol_spbcgs.h [code] | |
| kinsol_spgmr.h [code] | |
| kinsol_spils.h [code] | |
| kinsol_sptfqmr.h [code] | |
| LigandDroplet.h [code] | |
| Ligands.h [code] | |
| LinearAlgebra.h [code] | This is the header file that user code should include to pick up the SimTK Simmath linear algebra tools |
| List.h [code] | |
| LocalEnergyMinimizer.h [code] | |
| MassCenterMotionRemover.h [code] | |
| MassProperties.h [code] | These are utility classes for dealing with mass properties, particularly those messy inertias |
| Mat.h [code] | This file declares class Mat<NROWS, NCOLS, ELEMENT_TYPE, COL_SPACING, ROW_SPACING> |
| MatrixCharacteristics.h [code] | Here we declare the classes needed for managing the properties of matrices, which we call Matrix Characteristics |
| MatrixHelper.h [code] | Here we declare the detailed interface to the Simmatrix classes |
| Measure.h [code] | This file declares the base class Measure for all derived Measure handle classes, and the handle classes for built-in Measures |
| MeasureImplementation.h [code] | |
| Mechanics.h [code] | This header collects all the Mechanics header files in one place |
| MobilizedBody.h [code] | This defines the MobilizedBody class, which associates a body (the "outboard" body) with a mobilizer and a reference frame (the parent or "inboard" body), already present in a MatterSubsystem |
| MolecularMechanicsSystem.h [code] | |
| MultibodySystem.h [code] | |
| negator.h [code] | This file defines the negator<N> template which is an adaptor for the numeric types N (Real, Complex, conjugate) |
| NoseHooverThermostat.h [code] | |
| NTraits.h [code] | This file contains classes and typedefs needed to provide uniform handling of floating point numeric values |
| nvector_parallel.h [code] | |
| nvector_serial.h [code] | |
| nvector_SimTK.h [code] | This header defines a Sundials N_Vector implementation which uses SimTK's Vector class internally |
| ObservedPointFitter.h [code] | |
| Optimizer.h [code] | |
| Orientation.h [code] | These are numerical utility classes for dealing with the relative orientations of geometric objects |
| OrientedBoundingBox.h [code] | |
| Parallel2DExecutor.h [code] | |
| ParallelExecutor.h [code] | |
| Pdb.h [code] | |
| PDBReader.h [code] | |
| PeriodicPdbWriter.h [code] | |
| PeriodicVmdReporter.h [code] | |
| Plugin.h [code] | |
| PolygonalMesh.h [code] | |
| PolynomialRootFinder.h [code] | |
| PrivateImplementation.h [code] | This header provides declarations of the user-visible portion of the PIMPLHandle template classes that are used in the SimTK Core to implement the PIMPL (private implementation) design pattern |
| PrivateImplementation_Defs.h [code] | This header provides the definitions of the PIMPLHandle template methods as declared in PrivateImplementation.h, and also the declaration and definition of the template classes used for creating well- behaved implementation classes |
| Protein.h [code] | |
| Quaternion.h [code] | |
| Random.h [code] | |
| RiboseMobilizer.h [code] | |
| RNA.h [code] | |
| Rotation.h [code] | |
| Row.h [code] | This file declares class Row<NCOLS, ELEMENT_TYPE, STRIDE> |
| RungeKuttaFeldbergIntegrator.h [code] | |
| RungeKuttaMersonIntegrator.h [code] | |
| Scalar.h [code] | This is a user-includable header which includes everything needed to make use of SimMatrix Scalar code |
| SimbodyMatterSubsystem.h [code] | |
| SimbodyMatterSubtree.h [code] | |
| Simmatrix.h [code] | This is the header which should be included in user programs that would like to make use of all the Simmatrix facilities, but none of the other parts of SimTKcommon |
| SimTKcommon.h [code] | Includes internal headers providing declarations for the basic SimTK Core classes, including Simmatrix |
| SimTKcpodes.h [code] | This is the header file that user code should include to pick up the SimTK C++ interface to the Sundials CPODES coordinate-projection integrator |
| lapack/SimTKlapack.h [code] | |
| SimTKlapack.h [code] | |
| SimTKmath.h [code] | |
| SimTKmolmodel.h [code] | This is the header file that user code should include to pick up all Molmodel capabilities |
| SimTKsimbody.h [code] | This is the header file that user code should include to pick up all Simbody capabilities |
| SimTKsimbody_aux.h [code] | This is the header file that user code should include to pick up all Simbody capabilities |
| SmallDefsThatNeedBig.h [code] | This file defines leftover SmallMatrix implementations which need to know about our BigMatrix classes |
| SmallMatrix.h [code] | This file is the user-includeable header to be included in user programs to provide fixed-length Vec & Mat classes |
| SmallMatrixMixed.h [code] | This file defines global functions and class members which use a mix of Vec, Row, and Mat types and hence need to wait until everything is defined |
| SpatialAlgebra.h [code] | These are declarations for special matrices and vectors of use in implementing Rodriguez and Jain's Spatial Operator Algebra |
| Spline.h [code] | |
| SplineFitter.h [code] | |
| StableArray.h [code] | |
| Stage.h [code] | |
| State.h [code] | |
| String.h [code] | |
| Study.h [code] | |
| StudyGuts.h [code] | |
| Subsystem.h [code] | |
| SubsystemGuts.h [code] | |
| sundials_band.h [code] | |
| sundials_config.h [code] | |
| sundials_dense.h [code] | |
| sundials_direct.h [code] | |
| sundials_fnvector.h [code] | |
| sundials_iterative.h [code] | |
| sundials_lapack.h [code] | |
| sundials_math.h [code] | |
| sundials_nvector.h [code] | |
| sundials_spbcgs.h [code] | |
| sundials_spgmr.h [code] | |
| sundials_sptfqmr.h [code] | |
| sundials_types.h [code] | |
| Superpose.h [code] | Kabsch superposition algorithm implementation |
| SymMat.h [code] | This file declares class SymMat<M, ELEMENT_TYPE, ROW_SPACING> |
| System.h [code] | |
| SystemGuts.h [code] | |
| TemplatizedLapack.h [code] | These is a templatized, C++ callable interface to LAPACK and BLAS |
| Testing.h [code] | This file defines a SimTK::Test class and some related macros which provide functionality useful in regression tests |
| TextDataEventReporter.h [code] | |
| ThreadLocal.h [code] | |
| TimeStepper.h [code] | |
| Transform.h [code] | |
| units.h [code] | |
| UnitVec.h [code] | |
| UserFunction.h [code] | |
| Value.h [code] | |
| VanDerWaalsForce.h [code] | |
| VanderWallSphere.h [code] | |
| Vec.h [code] | Declaration of class Vec<NROWS, ELEMENT_TYPE, STRIDE> |
| VectorMath.h [code] | |
| VelocityRescalingThermostat.h [code] | |
| VerletIntegrator.h [code] | |
| VmdConnection.h [code] | |
| VoxelHash.h [code] | |
| VTKEventReporter.h [code] | |
| VTKVisualizer.h [code] | This is the user-visible handle class for the VTK Reporter which provides a 3d animation window for viewing MultibodySystem simulations |
| Water.h [code] | |
| WaterDroplet.h [code] | |
