SimTK: Project category

RNA

Biocomputational methods complement experimental techniques to expand our understanding of RNA, molecules vital to the normal expression of genes within our bodies.

News

ForceBalance version 1.7.0 released!

ForceBalance : Systematic Force Field Optimization Dec 3, 2019

OpenSim gets high marks as a multibody system simulator

Simbody: Multibody Physics API Aug 3, 2015

Macromolecular Simulation Software Workshop featuring OpenMM

OpenMM Jul 15, 2015

Publications

P. Eastman, J. Swails, J. D. Chodera, R. T. McGibbon, Y. Zhao, K. A. Beauchamp, L.-P. Wang, A. C. Simmonett, M. P. Harrigan, C. D. Stern, R. P. Wiewiora, B. R. Brooks, and V. S. Pande. "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics." PLOS Comp. Biol. 13(7): e1005659.

Tek, A., Korostelev, A.A. and Flores, S.C. (2015) MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory. Nucleic Acids Res., 10.1093/nar/gkv1457.

Wang, L-P., Martinez, T. J. and Pande, V.S. "Building force fields - an automatic, systematic and reproducible approach", submitted.

Discussion

Re: Metadynamics with CustomCentroidBondForce to pull out

OpenMM Jul 6, 2020

Re: Can I trick Modeller.addMembrane into creating a membrane without requiring a list of positions?

OpenMM Jul 2, 2020

Re: Using Simbody in matlab.

Simbody: SimTK multibody dynamics API Jul 1, 2020

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Version 4.0.4. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 6.0.5.

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