Ribosomal translocation with EF-G
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Full_trajectory
Full morph trajectory of translocation with EF-G. Steps 1 to 6.
trajectory v2
Jun 12, 2015

With and without full complement of ribosomal proteins  View License

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full_morph_translocation_proteins_gateblocked.tgz
Nov 22, 2015
31 MB
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Translocation with proteins, gate blocked

full_morph_translocation_proteins_gatepass.tgz
Nov 22, 2015
31 MB
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Translocation with proteins

full_morph_translocation.pdb
Nov 22, 2015
839 MB
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Full trajectory with rRNA + EF-G

translocation_gate_passing.m4v
Jun 05, 2017
5 MB
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Movie showing full translocation trajectory, including gate-passing. Includes EF-G. Kindly cite our MMB-GUI paper if you show this.

PLEASE CITE THESE PAPERS

Tek, A., Korostelev, A.A. and Flores, S.C. (2015) MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory. Nucleic Acids Res., 10.1093/nar/gkv1457. (2015) View

Previous Releases


trajectory v1

Jul 24, 2014

First version of the trajectory.  View License

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translocation_gate_passing.m4v
Nov 09, 2014
5 MB
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full_translocation.m4v
Nov 09, 2014
5 MB
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full_morph_translocation.tgz
Feb 08, 2015
202 MB
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Inputs for full trajectory
Input files used to generate the full morph trajectory of EF-G induced ribosome translocation
Input files
Feb 22, 2015

See notes for instructions.Notes  View License

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step3to4_remake.zip
Feb 22, 2015
7 MB
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step4to5_remake.zip
Feb 22, 2015
4 MB
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step1to2.zip
Feb 22, 2015
4 MB
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step2to3_remake.zip
Feb 22, 2015
5 MB
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step5to6_remake.zip
Feb 22, 2015
6 MB
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Morphs
Morph benchmark
version 1
Jan 14, 2015

Supporting files  View License

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MorphCalpump.zip
Jan 14, 2015
272 KB
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MorphMyosin.zip
Jan 14, 2015
265 KB
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MorphNucleotidase.zip
Jan 14, 2015
152 KB
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MorphRBP.zip
Jan 14, 2015
80 KB
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MorphRNaseIII.zip
Jan 14, 2015
262 KB
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Last updated
Jun 5, 2017
Image not available
Alex Tek
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Samuel Flores

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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