<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:arial,helvetica,sans-serif;font-size:10pt">If the feature vectors are mostly '0', then the problem could be a dirty test environment.<br><br>Go to the 'tests/' directory and 'make clean' and re-run the tests.<br><br>I've changed the test Makefile so all tests clean up prior to running. This behavior may not be the friendliest for retroactive testing, but we'll see...<br><br>Blast, does that mean that I need to add tests that test the tests to complete our QA process?<br><br>Cheers,<br><br>- m.<br><div> </div>__________________________________<br>Mike Wong, Staff Research Associate<br>Center for Computing for Life Sciences (CCLS)<br>San Francisco State University<br>1600 Holloway Avenue, Hensill Hall 301, SF, CA 94132<br>(415) 405-2119<br>mikewong@sfsu.edu<div><br></div><div style="font-family: arial,helvetica,sans-serif; font-size:
10pt;"><br><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt;"><font face="Tahoma" size="2"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Trevor Blackstone <tblackstone@gmail.com><br><b><span style="font-weight: bold;">To:</span></b> Mike Wong <mikewong@sfsu.edu><br><b><span style="font-weight: bold;">Cc:</span></b> Gurgen Tumanyan <tumanian@gmail.com>; Marc Sosnick <marcsosnick@mac.com><br><b><span style="font-weight: bold;">Sent:</span></b> Tue, November 17, 2009 11:03:10 AM<br><b><span style="font-weight: bold;">Subject:</span></b> FEATURE Test Failures<br></font><br>
Mike, I just finished a clean Fedora install and checked out the sources, but running 'make test' is giving me errors in the feature vectors. I thought it was just a precision error because I didn't replace the tests/hits folder with my own version, but looking at a diff of the *.ff files shows entries in each vector that are consistently 0 in the current build, but are whole numbers in the r418 hits. E.g., when I generate tests/testout/trypsin_ser_og.pos.ff, vector entry 34 is always 0, but the same entries in tests/hits/trypsin_ser_og.pos.ff contain 7, 0, 21, 8, 4.... Several other entries have differences as well. I've checked out several versions back to r550 and so far the results are the same - each revision differs from the hits with entries all set to 0.<br><br>I'm hoping this is a simple error on my part for not configuring the test environment correctly, but could someone take a look at some of the older revisions to confirm
if a problem exists, or if I should even be concerned with this?<br><br>Trevor<br><br></div></div>
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