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ü ђActivityPriorityDeadlineStatusMetric(s) ImpactedAnticipated OutcomeHighon-going5c, 6Low2, 4³Metrics:  1 = research output,  2 = usefulness of software and data, 3 = collaboration power, 4 = training effectiveness, 5 = community services, 6 = awareness of Simbios and workPromote Publication RepositoryCollect Testimonial LettersMed5, 6Biositemaps RDF File5,6ƒDissemination tool that can increase traffic to simtk.org and increase use of software. Example of collaboration between the NCBCs.Update News Items on WebsitesPromote Simbios awareness. NCBC Dissemination Working GroupdPromote Simbios awareness. Increase cross-NCBC activity. Example of collaboration between the NCBCs.Increase SimTK Core Users2, 6+Identify and promote value of SimTK Core.  SClear up misconceptions about simtk.org. Make the website more useful to newcomers.:Dissemination Communications to Exec and Simbios CommunityUpdate Simbios website.Increase support/education of SimTK Core usersMerge News Databases;Facilitate sharing of news items (work with Blanca on this)KTo be done:  1)  Meet with Blanca to set deadline and design specifications??Simbios Research Videos‡To be done:  1)  Review video taken from the summer and see if short clips can be made for Simbios website and/or scivee and/or YouTubeBIncrease awareness of Simbios and provide examples of software use*Increase clarity about Simbios and missionNotesTaskƒSubversion asks for user ID when trying to access non-existent project (and then rejects user/password) instead of displaying error6Difference in behavior when ending URL with "/" or notBug #157Generate biositemap RDF file Related projects link capabilityDelete document group'Enroll in mailing list when downloading,Issue with using HTML in project descriptionFeature #624(Option to reassign files to new releasesFeature #3483Group download statistics into different categoriesFeature #2148Gray out items in left-hand menu that are not being usedAllow ordering of publicationsFeature #154%Provide for "hard delete" of projectsXNews links on project overview page should jump to specific news item, not just the pageFeature #139FPrivate projects should have protected mailing list archives (default)Bug #223*Bug categories cannot be deleted or hidden<Checkbox for email on new bug submissions only does not workBug #495>Display order of team members has slightly unexpected behavior)Error deleting package that has a release&Error in closing items in Task Manager>After logging in, go to page member initially trying to accessSearch using subset of termsID #693Feature #168, Bug #198?LAdd icons in search results (e.g., has downloads, publication project, etc.)
 150 to be definedFeature #694)Correct double-counting of download filesBug #695Track downloading from archivesWiki integration into Simtk.orgRenaming download capabilitiesin progress/* Request for new statistics for nmbl models:  41)  count all files downloaded across the 6 projects,2)  count unique users across all 6 projects43)  dynamically determine which projects to include?high priority to investigateFeature #118`high-level fix is done but needs to be implemented on a per-page basis -- way to automate this? €investigate further.  Counts attempts but no known way to identify "complete" unless we can find a callback or something similarmapping sent to RandyCMore information provided in emails for feature/bug request changes^Feature #456, Bug #676;  big issue to fix b/c it's all over the place (1 week focused project)’Bug #621;  May be just need more info to let user know that releases need to be deleted first;  do we really want to recursively delete all files?%Feature #696;  will take awhile to doGFeature #489;  needs 5 straight days to do, but scoped out from earlier.Bug #619;  use download file ordering as model9Bug #652;  fix or look into new package for task manager?EBug #490;  fix or look into new package for managing features & bugs?EBug #697;  fix or look into new package for managing features & bugs?0Ability to post & share HTML files via Simtk.orgFeature #700IFeature #699;  fix or look into new package for managing features & bugs?¨ID #692;  May just need explain what's done or look at Ebay model that suggests searching on fewer terms and provides counts on some combos that are subset of all terms*in progress;  tested, needs to be promotedaNeed email sent when  "Assigned To" field for Features & Bugs is set to "Nobody" (also "Anybody")Management of Simtk.org website¼Feature #148;  reject?  Why is it needed?  Frees up a little space vs. maintaining a history - may get higher priority if it turns out repository and downloads are taking up a lot of spacez* Follow up with wiki plug-in set up (how to keep all projects in-sync given that OpenSim has special plug-in for YouTube)m* Request for additional field:  How did you first hear about us?  Website link / RSS feed--Please specify:  Reorganize Simbios website Keep Simbios information updatedtAdmin:  Coordinate teleconference? Other activities:  Joint RSS feed?  NIH Institutes glossies?  NCBCtk.org website?	#4 Increase usefulness of Simtk.orgTo do:  1)  Provide links between projects;  2)  Implement method to solicit feedback for individual projects;  3)  More strongly explain benefits of creating a project;  4)  Run focus groups on what's needed to make site more useful;  5)  Add validation examples (case studies) to show biologists that code works;    6)  update page on "Source Code Repository" -- not clear (Grace Peng);  7)  Improve download stats page?  (some difficulty from user testing on this, x-axis not readable plus other suggestions from Jeanette);  8) Implement policy to deal with svn repository space use;  9)  Implement policy to ensure that users who sign up are valid/realeTo be done:  Update Simtk.org survey to track if people find the site via a Biositemap-related link  VExamples to show usefulness of software.  Goal:  All letters collected by 11/1/2009.  Œ
To do:  1)  Send out requests for myosin DBP (7/24/2009);  2)  Send out draft letters and more requests for cardiovascular DBP (7/27/2009);   3)  Add announcement to Simtk.org and Simbios websites (7/31/2009);  4)  Spec out feedback mechanism for Simtk.org  (7/31/2009);  5)  Get letters from names provided by Exec and by emailing those who attended workshops and/or on project news mailing listClean up Simtk.org¨To do:  1)  Prioritize projects (7/31/2009);  2)  Review user profiles and project descriptions to clean up  (7/31/2009);  3) Redesign main pages - specs due (8/7/2009)Simbios press releases-To do:  Find out status of OpenSim K-12 grant£To be done:   1)  Contact individuals about posting on simtk.org (MSM list, list of classic papers, new Simbios pubs, check out special issue on virtual human);  (identify and start adding 2 projects by Aug. 1, to be done by end of August) 2)  Set up rewards structure for select new publications (highlight in BCR?  Notice on front page of simtk.org?  "new" and "pub" icons in search results);   3)  Advertise repository via editorial or blog in 3 target areas corresponding to publication project areas;  4)  Put in tracking to see how many people sign up b/c of publication project;  5)  Seek collaborations with journals, maybe RNA Biology with their new pub. policy?    €Increase traffic to simtk.org; increase use of software and data provided via publications; promote open source/open science.  
 151 -Contact faculty and collaborators for updatesOpenMM integrationpTo do:  1)  follow up with integration into AMBER (8/30/2009);  2)  identify next target MD package  (8/30/2009)Workshop planning™To do:  1)  Choose dates for fall workshops for RNA and MD workshop series (8/30/2009);  2)  Identify conferences to run workshop at, if any  (8/30/2009)On-line Course for OpenSimMove BCR on-lineOpenSim User Guide - updatedOpenSim Developer TutorialRNA Book Chapter <É1Apply to participate in Google Summer of Code (?)(Get NAST running on GPU on all platforms¬
To do:  1)  Identify specific examples where Core was used and post on website;  2)  Identify, run, and post benchmarks;  3)  Schedule new release (what features and date);  4)  Post/email notice/flier to "competitor" users RE SimTK Core (e.g., SD Fast)  (8/30/2009) 5)   Promote via software source sites, blogs, and newsgroups for areas related to examples;  [ideas:  Explore branding issues;    Explore idea of a competition]bTo do:  1)  Identify tutorial to implement  (8/7/2009);  2)  Identify software to use (8/21/2009) —To do:  Identify ways to encourage faculty to keep Simbios posted on publications and other activites;  Quarterly requests for information  (7/27/2009)|To do:  1)  Decide on content and assign tasks by 8/7;  2)  Get first drafts by 9/18;  3)  Final draft and printing on 10/16GTo do:  1)  Outline due 9/1;  2)  First draft due 9/30;  Final due 12/9
 152 3, 4, 5, 6OPromote Simbios news and software (and BCR?) through professional organizations×Goal:  Clarify Simbios mission and offerings and organize information available.  Add validation examples (case studies) to show biologists that code works.  Highlight RSS feed, podcasts, and other Simbios offeringsVPHOP Collaboration1, 3%To do:  Check in with Randy on statusrTo do:  1)  File paperwork for LEAR (7/31);  2)  Review comments and submit suggestions to address to Marco  (8/7)ÿšý2d3s{4Š

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