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     *      * Depending on whether the model was modified and run, a new model will be created which appends the _mod to the model file name and result files will be named similarly.
     * When the simulation is over, the user will be notified via email (files may be downloaded from the designated location).
     * All the files will be in the subversion repository (all but the FEBio files).
     * The out put files can be kept somewhere temporarily and do not need to be in the repository.
     * An interface may be required to download the result files.
     * The notification email can provide the link to that download.
     * We may get some post-processing scripts to extract relevant information from the result files and populate the database with that relevant information and that can be stored indefinitely.
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 2. Discuss potential high performance computing platforms (e.g XSEDE).
     *
 3. Decide action items for next meeting.
     *
 4. Other
     *

Recurring Meeting of Cleveland Clinic - Stanford University

Date: November 22, 2013

Time: 4:00 PM EST

Means: Conference Call

Attendees:

  1. Ahmet Erdemir (Cleveland Clinic)
  2. Snehal Chokhandre (Cleveland Clinic)
  3. Craig Bennetts (Cleveland Clinic)
  4. Joy Ku (Stanford University)
  5. Henry Kwong (Stanford University)

Agenda:

  1. Discuss specifications and test problem development for the compute gateway to Simtk.
  2. Discuss potential high performance computing platforms (e.g XSEDE).
  3. Decide action items for next meeting.
  4. Other

Notes:

  1. Discuss specifications and test problem development for the compute gateway to Simtk.

    • http://wiki.simtk.org/openknee/Specifications/CloudComputingPrototype

      • On the cloud computing prototype page, Craig described the files needed to run the simulations on the server. Depending on the options the user selects on the user interface, different sets of files will be used. File descriptions provide information about basic set of files, how to use the main script (which will run on the server) and other related files which are passed as argument for that script.
      • Craig also prepared a sample layout for web interface. This layout provides a basic idea of components of the web interface. Initially, only one available version of FEBio will be used. More versions may be made available in the future.
      • There will be an option to select the model which the user wants to run and depending on whether the model needs to be modified there will be two files associated with the model file, a script to modify that model and a configuration file that specifies what to modify in the model.
      • Depending on whether the model was modified and run, a new model will be created which appends the _mod to the model file name and result files will be named similarly.
      • When the simulation is over, the user will be notified via email (files may be downloaded from the designated location).
      • All the files will be in the subversion repository (all but the FEBio files).
      • The out put files can be kept somewhere temporarily and do not need to be in the repository.
      • An interface may be required to download the result files.
      • The notification email can provide the link to that download.
      • We may get some post-processing scripts to extract relevant information from the result files and populate the database with that relevant information and that can be stored indefinitely.
  2. Discuss potential high performance computing platforms (e.g XSEDE).
  3. Decide action items for next meeting.
  4. Other

RecurringMeetings/2013-11-22 (last edited 2016-05-04 22:09:49 by localhost)