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* TBD | * Cleveland Clinic and Stanford University teams continued having monthly conference calls to to discuss web based computation interface. Please refer to meeting minutes in Cleveland Clinic - Stanford University section of ["RecurringMeetings"]. * Detailed specifications on a prototype for web-based computing infrastructure was provided by the Cleveland Clinic team, see [http://wiki.simtk.org/openknee/Specifications/CloudComputingPrototype?action=recall&rev=19 Revision as of May 18, 2013] or [:Specifications/CloudComputingPrototype: current version]. * A prototype of a web-based interface for submission of simulations was developed on a staging server; this was summarized in the progress report submitted to National Institutes of Health along with a snapshot of the interface, see https://simtk.org/websvn/wsvn/openknee/doc/R01_rppr-y1-activities.pdf. * Upcoming steps include development of a results retrieval interface, model administration interface, and launching of cloud computing infrastructure. |
Recurring Meeting of the Advisory Board
Date(s): May 19-30, 2014
Due to scheduling conflicts, the group meeting with the Advisory Board members were scheduled on an individual basis with each member. Please refer to Meeting Minutes for more details.
Progress Report
Project Specific Aims
- To provide an open, freely available, and collaborative development, testing, simulation and dissemination platform for in silico exploration of the biomechanics of healthy and diseased knees.
- To develop in silico biomechanical models of healthy and diseased knee joints of different genders and ages, supported by specimen-specific joint and tissue level experimental mechanics.
Project Infrastructure
https://simtk.org/home/openknee (project website)
http://wiki.simtk.org/openknee (project wiki)
Project Contact
Ahmet Erdemir, PhD, erdemira@ccf.org, https://simtk.org/users/aerdemir
Advisory Board
Clinical. Jack Andrish, MD; Carl Winalski, MD; Morgan Jones, MD, MPH; Paul Saluan, MD (Cleveland Clinic)
Engineering. Yasin Dhaher, PhD (Northwestern University); Trent Guess, PhD (University of Missouri), Rami Korhonen, PhD (University of Eastern Finland)
Progress Period
- October 28, 2013 - May 19, 2014
Development Team during Progress Period
Cleveland Clinic Core Team. Craig Bennetts, Dylan Beckler, Tara Bonner, Snehal Chokhandre, Robb Colbrunn, Ahmet Erdemir, Jason Halloran
Stanford University. Scott Delp, Joy Ku, Henry Kwong
University of Utah. Ben Ellis, Jeff Weiss, Steve Maas
Community. Elvis Danso, Shannon Donnola, Chris Flask, Cara Sullivan
See https://simtk.org/project/xml/team.xml?group_id=485 for full details on the project team.
Goals of Progress Period
- Complete a prototype of web based computation infrastructure (Stanford University)
- Complete implementation of high priority features in simulation software (University of Utah)
- Complete experimentation (specifications and data collection) for Specimen 001 (Cleveland Clinic)
- Disseminate data from Specimen 001 (Cleveland Clinic)
Start development and review of modeling specifications (Cleveland Clinic & Community)
Start development and review of simulation specifications (Cleveland Clinic & Community)
Launch community projects program (reviews, internships, and collaborations) (Cleveland Clinic & Community)
- Publish previous work on Open Knee - Generation 1 (Cleveland Clinic)
Please also refer to previous meeting minutes of the Advisory Board at ["RecurringMeetings/2013-10-28"]. For more details, see the ["Roadmap"] and the proposed timeline of the proposal in attachment:GrantInformation/proposal.pdf.
Activities of Progress Period
- Cloud computing prototype
Cleveland Clinic and Stanford University teams continued having monthly conference calls to to discuss web based computation interface. Please refer to meeting minutes in Cleveland Clinic - Stanford University section of ["RecurringMeetings"].
Detailed specifications on a prototype for web-based computing infrastructure was provided by the Cleveland Clinic team, see [http://wiki.simtk.org/openknee/Specifications/CloudComputingPrototype?action=recall&rev=19 Revision as of May 18, 2013] or [:Specifications/CloudComputingPrototype: current version].
A prototype of a web-based interface for submission of simulations was developed on a staging server; this was summarized in the progress report submitted to National Institutes of Health along with a snapshot of the interface, see https://simtk.org/websvn/wsvn/openknee/doc/R01_rppr-y1-activities.pdf.
- Upcoming steps include development of a results retrieval interface, model administration interface, and launching of cloud computing infrastructure.
- Simulation software features
- TBD
- Experimentation
- TBD
Modeling & simulation
- TBD
- Dissemination
- TBD
- Community projects
- TBD
- Publications
- TBD
- Other
First year progress report was submitted to National Institutes of Health, see [https://simtk.org/websvn/wsvn/openknee/doc/R01_rppr-y1-activities.pdf activities], [https://simtk.org/websvn/wsvn/openknee/doc/R01_rppr-y1-products.pdf products], [https://simtk.org/websvn/wsvn/openknee/doc/R01_rppr-y1-resources.pdf resources]
The entry page for the wiki was organized for easy access to various areas of the wiki, see [http://wiki.simtk.org/openknee/FrontPage?action=recall&rev=31 Revision as of May 18, 2013] or [:FrontPage: current version]
Details of activities can be found in past meeting minutes of various teams at ["RecurringMeetings"]. For a complete list of various tasks (finished or in progress), please refer to https://simtk.org/pm/?group_id=485.
Plans for Next Progress Period (May 19, 2014 - November 2014)
- Enhance prototype of web based computation infrastructure (Stanford University)
- Implement additional features in simulation software (University of Utah)
- Complete experimentation for Specimen 001 (Cleveland Clinic)
- Complete experimentation for Specimen 002 (Cleveland Clinic)
- Launch model for Specimen 001 (Cleveland Clinic)
Complete development and review of modeling specifications (Cleveland Clinic & Community)
Complete development and review of simulations specifications (Cleveland Clinic & Community)
Start plans for 2015 summer internship program as part of community projects (reviews, internships, and collaborations) (Cleveland Clinic & Community)
- Publish previous work on Open Knee - Generation 1 (Cleveland Clinic)
For more details, see the ["Roadmap"] and the proposed timeline of the proposal in attachment:GrantInformation/proposal.pdf.
Meeting Minutes
Date, Time, Means:
- May 19, 2014, 2:00 PM EST, conference call (AE,TBD)
- May 30, 2014, 8:00 AM EST, in person meeting (AE,TBD)
Attendees:
- TBD
Agenda:
- Progress update, see progress report at
- Recap of previous meeting minutes, see meeting minutes at
- Action items for following meeting
- Other
Immediate Action Items:
See notes for details.
All Advisory Board Members
- TBD.
Ahmet Erdemir
- TBD
Notes:
- TBD.
- TBD