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* | * The team at the Stanford University mainly focused on the upgrade of the !SimTk.org infrastructure. Internal testing of the updated site has been taking longer than expected. As a result, the launch of the updated site has been delayed. With the upgrade of !Simtk.org, a beta release of the cloud computing infrastructure will be launched for usability testing. Cleveland Clinic team has Open Knee(s) - Generation 1 model ready with pre- and post-processing scripts for the beta release. The usability testing will facilitate the development of a model administration interface and the implementation of quota management features. * Cleveland Clinic and Stanford University teams cancelled majority of the conference calls, awaiting upgrade of !SimTk.org and launch of Open Knee(s) cloud computing beta release. For those which were held, please refer to meeting minutes in Cleveland Clinic - Stanford University section of ["RecurringMeetings"]. * Detailed specifications on a prototype for web-based computing infrastructure can be found at the wiki page [http://wiki.simtk.org/openknee/Specifications/CloudComputingPrototype?action=recall&rev=19 Revision as of November 17, 2015] or [:Specifications/CloudComputingPrototype: current version]. |
Recurring Meeting of the Advisory Board
Date(s): Nov 19 - , 2015
Due to scheduling conflicts, the group meeting with the Advisory Board members were scheduled on an individual basis with each member. Please refer to Meeting Minutes for more details.
Progress Report
Project Specific Aims
- To provide an open, freely available, and collaborative development, testing, simulation and dissemination platform for in silico exploration of the biomechanics of healthy and diseased knees.
- To develop in silico biomechanical models of healthy and diseased knee joints of different genders and ages, supported by specimen-specific joint and tissue level experimental mechanics.
Project Infrastructure
https://simtk.org/home/openknee (project website)
http://wiki.simtk.org/openknee (project wiki)
Project Contact
Ahmet Erdemir, PhD, erdemira@ccf.org, https://simtk.org/users/aerdemir
Advisory Board
Clinical. Jack Andrish, MD; Carl Winalski, MD; Morgan Jones, MD, MPH; Paul Saluan, MD (Cleveland Clinic)
Engineering. Yasin Dhaher, PhD (Northwestern University); Trent Guess, PhD (University of Missouri), Rami Korhonen, PhD (University of Eastern Finland)
Progress Period
- May 9, 2015 - November 19, 2015
Development Team during Progress Period
Cleveland Clinic Core Team. Craig Bennetts, Tara Bonner, Snehal Chokhandre, Robb Colbrunn, Ahmet Erdemir
Stanford University. Scott Delp, Joy Ku, Henry Kwong
University of Utah. Ben Ellis, Jeff Weiss, Steve Maas
Community. Shannon Donnola, Chris Flask, Omar Gad, Raghav Malik, Diana Suciu, Connor Lough
See https://simtk.org/project/xml/team.xml?group_id=485 for full details on the project team.
Goals of Progress Period
- Launch and test usability of web based computation infrastructure (Stanford University)
- Publish in situ strain feature and implement additional features in simulation software (University of Utah)
- Disseminate joint mechanics data for oks001, oks002, oks003, oks004, oks006, oks007 (Cleveland Clinic)
- Complete joint imaging and joint mechanics experimentation on oks008, oks009, oks010, oks011 (Cleveland Clinic)
- Start tissue mechanics testing of all specimens (Cleveland Clinic)
Continue development and review of modeling & simulation specifications (Cleveland Clinic & Community)
- Start developing models for all specimens (Cleveland Clinic)
- Follow up publication of previous work on Open Knee - Generation 1 (Cleveland Clinic)
Please also refer to previous meeting minutes of the Advisory Board at ["RecurringMeetings/2015-05-08"]. It should be noted that the timeline of activities has deviated from the original proposal, i.e., see the ["Roadmap"] and the proposed timeline of the proposal in attachment:GrantInformation/proposal.pdf.
Activities of Progress Period
- Cloud computing prototype
The team at the Stanford University mainly focused on the upgrade of the SimTk.org infrastructure. Internal testing of the updated site has been taking longer than expected. As a result, the launch of the updated site has been delayed. With the upgrade of !Simtk.org, a beta release of the cloud computing infrastructure will be launched for usability testing. Cleveland Clinic team has Open Knee(s) - Generation 1 model ready with pre- and post-processing scripts for the beta release. The usability testing will facilitate the development of a model administration interface and the implementation of quota management features.
Cleveland Clinic and Stanford University teams cancelled majority of the conference calls, awaiting upgrade of SimTk.org and launch of Open Knee(s) cloud computing beta release. For those which were held, please refer to meeting minutes in Cleveland Clinic - Stanford University section of ["RecurringMeetings"].
Detailed specifications on a prototype for web-based computing infrastructure can be found at the wiki page [http://wiki.simtk.org/openknee/Specifications/CloudComputingPrototype?action=recall&rev=19 Revision as of November 17, 2015] or [:Specifications/CloudComputingPrototype: current version].
- Simulation software features
- Experimentation
Modeling & simulation
- Dissemination
- Community projects
- Publications
Details of activities can be found in past meeting minutes of various teams at ["RecurringMeetings"].
Plans for Next Progress Period (November 20, 2015 - May 2015)
It should be noted that the timeline of activities has deviated from the original proposal, i.e., see the ["Roadmap"] and the proposed timeline of the proposal in attachment:GrantInformation/proposal.pdf.
Meeting Minutes
Date, Time, Means:
- TBD
Attendees:
- TBD
Agenda:
- Progress update, see progress report at:
- Recap of previous meeting minutes, see meeting minutes at:
- Action items for following meeting.
- Other.
Immediate Action Items:
See notes for details.
All Advisory Board Members
- TBD
Ahmet Erdemir
- TBD
Notes:
- Due to scheduling conflicts, a series of meetings were conducted to inform the Advisory Board about Open Knee(s) activities and get feedback.
- Progress update.
- TBD
- Recap of previous meeting minutes.
- TBD
- Action items for following meeting.
- See Immediate Action Items above.
- Other.
- TBD