Diff for "Roadmap/Segmentation"

Differences between revisions 11 and 12

Segmentation

Authors: AE = Ahmet Erdemir, CB = Craig Bennetts, SC = Snehal Chokhandre, RC = Robb Colbrunn, TB = Tara Bonner, OG = Omar Gad, CPL = Connor Lough, AGS = Ariel Schwartz, TO = Tammy Owings, EMK = Ellen Klonowski

Bone Segmentation	FMB (femur)	TBB (tibia)	FBB (fibula)	PTB (patella)
oks001	CB (reference) OG CPL_01 CPL_02	CB (reference) OG CPL_01 CPL_02 SC_01 AGS_01	CB (reference) OG CPL_01 CPL_02	CB (reference)OG CPL_01 CPL_02 RC_01 AGS_01
oks002	CPL_01 CPL_02	CPL_01 CPL_02	CPL_01 CPL_02	RC_01
oks003	SC_01 AGS	SC_01 AGS	SC_01 AGS	RC_01 AGS
oks004	SC_01	SC_01	SC_01	RC_01
oks006	SC_01	SC_01 SC_02	SC_01	RC_01 SC_01
oks007	SC_01	SC_01	SC_01	RC_01
oks008	SC_01	SC_01	SC_01	RC_01
oks008	SC_01	SC_01	SC_01	RC_01
oks009	SC_01	SC_01	SC_01	RC_01 SC_01
oks010
oks011
oks012
oks013
oks014
oks015
oks016
oks017
oks018
oks019
oks020
oks021
oks022

Cartilage Segmentation	FMC (femoral)	TBC-M (medial tibial)	TBC-L (lateral tibial)	PTC (patellar)
oks001	CB (reference) OG	CB (reference) OG	CB (reference) OG	CB (reference) AGS_01 OG RC_01
oks002	TO_01	TO_01	TO_01	TO_01
oks003	SC_01 AGS AGS_03	SC_01 AGS	SC_01 AGS	SC_01 AGS
oks004	TO_01	TO_01	TO_01	TO_01
oks006	TO_01	TO_01 TO_02	TO_01	TO_01
oks007	TO_01	TO_01	TO_01	TO_01
oks008	TO_01 SC_01	TO_01 SC_01 SC_02	TO_01 SC_01	TO_01 SC_01
oks009	TO_01	TO_01	TO_01 TO_02	TO_01
oks010
oks011
oks012
oks013
oks014
oks015
oks016
oks017
oks018
oks019
oks020
oks021
oks022

Menisci Segmentation

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
MNS-M (medial)	CB (reference) OG TB_01	TB_01	TB_01 AGS AGS_02 AGS_01	TB_01	TB_01 TB_02	TB_01 TB_02	TB_01 TB_02	TB_01 TB_02
MNS-L (lateral)	CB (reference) OG	TO_01	SC_01 AGS AGS_02	SC_01 TO_01	TO_01 TO_02	TO_01 TO_02	TO_01 TO_02	TO_01 TO_02

Connective Tissues Segmentation - Ligaments and Tendons

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
ACL	CB (reference) OG AGS_01	SC_01 AGS_01	SC_01 AGS	SC_01	SC_01	SC_01	SC_01	SC_01
MCL	AE (reference) OG	AGS_01	SC_01 AGS AGS_02 AGS_01	AGS_01 SC_01	SC_01 SC_02	SC_01 SC_02	SC_02	SC_01 SC_02
PCL	CB (reference) OG	SC_01 AGS_01	SC_01 AGS	SC_01	SC_01	SC_01	SC_01	SC_01
LCL	CB (reference) OG	SC_01 AGS_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01 SC_02	SC_01
PTL (patellar ligament)	CB (reference) OG	SC_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01	SC_01
QAT (quadriceps tendon)	CB (reference) OG	SC_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01	SC_01

Registration Markers Segmentation

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
FMR-L	CB_02 (reference)	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
FMR-M	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
FMR-P	CB_01 (reference) CB_02	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
PTR-L	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
PTR-M	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
PTR-S	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
TBR-L	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
TBR-M	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
TBR-P	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01

-  ⇤ ← Revision 11 as of 2020-05-06 16:34:59 → 
  Size: 32143
  Editor: klonowe
  Comment:
+   ← Revision 12 as of 2020-05-06 16:54:51 → ⇥
  Size: 30289
  Editor: klonowe
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 33:
-Cartilage Segmentation
|| ||oks001 ||oks002 ||oks003 ||oks004 ||oks006 ||oks007 ||oks008 ||oks009 ||
||FMC (femoral) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_FMC.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/FMC|OG]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_FMC_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_FMC_AGS.nii|AGS]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_FMC_AGS_03.nii|AGS_03]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMC_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMC_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FMC_TMO_01.nii|TO_01]] ||
||TBC-M (medial tibial) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBC-M.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/TBC-M|OG]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_TBC-M_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_TBC-M_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-M_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-M_TMO_02.nii|TO_02]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_SKC_02.nii|SC_02]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-M_TMO_01.nii|TO_01]] ||
||TBC-L (lateral tibial) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBC-L.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/TBC-L|OG]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_TBC-L_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_TBC-L_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-L_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-L_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-L_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-L_TMO_02.nii|TO_02]] ||
||PTC (patellar) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTC.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTC_AGS_01.nii|AGS_01]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/PTC|OG]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTC_RWC_01.nii|RC_01]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_PTC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_PTC_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_PTC_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_PTC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTC_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTC_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FMC_TMO_01.nii|TO_01]] ||
+||oks004 ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_PTC_TMO_01.nii|TO_01]] ||
||oks006 ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-M_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-M_TMO_02.nii|TO_02]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTC_TMO_01.nii|TO_01]] ||
||oks007 ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBC-L_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMC_TMO_01.nii|TO_01]] ||
||oks008 ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMC_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMC_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-M_SKC_02.nii|SC_02]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-L_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBC-L_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTC_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTC_SKC_01.nii|SC_01]] ||
||oks009 ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FMC_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-M_TMO_01.nii|TO_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-L_TMO_01.nii|TO_01]] [[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBC-L_TMO_02.nii|TO_02]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FMC_TMO_01.nii|TO_01]] ||
||oks010 || || || || ||
||oks011 || || || || ||
||oks012 || || || || ||
||oks013 || || || || ||
||oks014 || || || || ||
||oks015 || || || || ||
||oks016 || || || || ||
||oks017 || || || || ||
||oks018 || || || || ||
||oks019 || || || || ||
||oks020 || || || || ||
||oks021 || || || || ||
||oks022 || || || || ||