Diff for "Roadmap/Segmentation"

Differences between revisions 5 and 6

Segmentation

Authors: AE = Ahmet Erdemir, CB = Craig Bennetts, SC = Snehal Chokhandre, RC = Robb Colbrunn, TB = Tara Bonner, OG = Omar Gad, CPL = Connor Lough, AGS = Ariel Schwartz, TO = Tammy Owings, EMK = Ellen Klonowski

Bone Segmentation

	FMB (femur)	TBB (tibia)	FBB (fibula)	PTB (patella)
oks001	CB (reference) OG CPL_01 CPL_02	CB (reference) OG CPL_01 CPL_02 SC_01 AGS_01	CB (reference) OG CPL_01 CPL_02	CB (reference) OG CPL_01 CPL_02 RC_01 AGS_01
oks002	CPL_01 CPL_02	CPL_01 CPL_02	CPL_01 CPL_02	RC_01
oks003	SC_01 AGS	SC_01 AGS	SC_01 AGS	RC_01 AGS
oks004	SC_01	SC_01	SC_01	RC_01
oks006	SC_01	SC_01 SC_02	SC_01	RC_01 SC_01
oks007	SC_01	SC_01	SC_01	RC_01
oks008	SC_01	SC_01	SC_01	RC_01
oks008	SC_01	SC_01	SC_01	RC_01
oks009	SC_01	SC_01	SC_01	RC_01 SC_01

Cartilage Segmentation

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
FMC (femoral)	CB (reference) OG	TO_01	SC_01 AGS AGS_03	TO_01	TO_01	TO_01	TO_01 SC_01	TO_01
TBC-M (medial tibial)	CB (reference) OG	TO_01	SC_01 AGS	TO_01	TO_01 TO_02	TO_01	TO_01 SC_01 SC_02	TO_01
TBC-L (lateral tibial)	CB (reference) OG	TO_01	SC_01 AGS	TO_01	TO_01	TO_01	TO_01 SC_01	TO_01 TO_02
PTC (patellar)	CB (reference) AGS_01 OG RC_01	TO_01	SC_01 AGS	TO_01	TO_01	TO_01	TO_01 SC_01	TO_01

Menisci Segmentation

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
MNS-M (medial)	CB (reference) OG TB_01	TB_01	TB_01 AGS AGS_02 AGS_01	TB_01	TB_01 TB_02	TB_01 TB_02	TB_01 TB_02	TB_01 TB_02
MNS-L (lateral)	CB (reference) OG	TO_01	SC_01 AGS AGS_02	SC_01 TO_01	TO_01 TO_02	TO_01 TO_02	TO_01 TO_02	TO_01 TO_02

Connective Tissues Segmentation - Ligaments and Tendons

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
ACL	CB (reference) OG AGS_01	SC_01 AGS_01	SC_01 AGS	SC_01	SC_01	SC_01	SC_01	SC_01
MCL	AE (reference) OG	AGS_01	SC_01 AGS AGS_02 AGS_01	AGS_01 SC_01	SC_01 SC_02	SC_01 SC_02	SC_02	SC_01 SC_02
PCL	CB (reference) OG	SC_01 AGS_01	SC_01 AGS	SC_01	SC_01	SC_01	SC_01	SC_01
LCL	CB (reference) OG	SC_01 AGS_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01 SC_02	SC_01
PTL (patellar ligament)	CB (reference) OG	SC_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01	SC_01
QAT (quadriceps tendon)	CB (reference) OG	SC_01	SC_01 AGS	SC_01 AGS_01	SC_01	SC_01	SC_01	SC_01

Registration Markers Segmentation

	oks001	oks002	oks003	oks004	oks006	oks007	oks008	oks009
FMR-L	CB_02 (reference)	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
FMR-M	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
FMR-P	CB_01 (reference) CB_02	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
PTR-L	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
PTR-M	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
PTR-S	CB_01 (reference)	AGS_01	AGS_01 AGS		AGS_01	AGS_01	AGS_01	AGS_01
TBR-L	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
TBR-M	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01
TBR-P	CB_01 (reference) CB_02 CB_03	AGS_01	AGS_01 AGS	AGS_01	AGS_01	AGS_01	AGS_01	AGS_01

-  ⇤ ← Revision 5 as of 2020-05-06 15:09:04 → 
  Size: 32908
  Editor: klonowe
  Comment:
+   ← Revision 6 as of 2020-05-06 15:20:22 → ⇥
  Size: 29633
  Editor: klonowe
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 9:
+||oks006 ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBB_SKC_02.nii|SC_02]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTB_SKC_01.nii|SC_01]] ||
||oks007 ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_PTB_RWC_01.nii|RC_01]] ||
||oks008 ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBB_SKC_01.nii|SC_01]]||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTB_RWC_01.nii|RC_01]] ||
||oks008 ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBB_SKC_01.nii|SC_01]]||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTB_RWC_01.nii|RC_01]] ||
||oks009 ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBB_SKC_01.nii|SC_01]]||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_PTB_SKC_01.nii|SC_01]] ||
-Line 11:
+Line 16:
-|| ||oks001 ||oks002 ||oks003 ||oks004 ||oks006 ||oks007 ||oks008 ||oks009 ||
||FMB (femur) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_FMB.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/FMB/|OG]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRG_FMB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRG_FMB_CPL_02.nii|CPL_02]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_FMB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_FMB_CPL_02.nii|CPL_02]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_FMB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_FMB_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FMB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FMB_SKC_01.nii|SC_01]] ||
||TBB (tibia) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBB.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/TBB/|OG]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBB_CPL_02.nii|CPL_02]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_TBB_AGS_01.nii|AGS_01]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_TBB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_TBB_CPL_02.nii|CPL_02]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_TBB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_TBB_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_TBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_TBB_SKC_02.nii|SC_02]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_TBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_TBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_TBB_SKC_01.nii|SC_01]] ||
||FBB (fibula) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_FBB.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/FBB/|OG]] [[https://simtk.org/svn/openknee/oks/oks001/dat/Segmentation/oks001_MRG_FBB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/Segmentation/oks001_MRG_FBB_CPL_02.nii|CPL_02]] ||[[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_FBB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks002/dat/segmentation/oks002_MRC_FBB_CPL_02.nii|CPL_02]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_FBB_SKC_01.nii|SC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_FBB_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks004/Segmentation/oks004_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_FBB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_FBB_SKC_01.nii|SC_01]] ||
||PTB (patella) ||[[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTB.nii|CB (reference)]] [[https://simtk.org/svn/openknee/oks/Segmentors/04/001/PTB/|OG]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRG_PTB_CPL_01.nii|CPL_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRG_PTB_CPL_02.nii|CPL_02]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks001/dat/segmentation/oks001_MRC_PTB_AGS_01.nii|AGS_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks004_MRC_PTB_RWC_01.nii|RC_01]] ||[[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks003/segmentation/oks003_PTB_AGS.nii|AGS]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks004_MRC_PTB_RWC_01.nii|RC_01]] ||[[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks006/Segmentation/oks006_MRC_PTB_SKC_01.nii|SC_01]] ||[[https://simtk.org/svn/openknee/oks/oks007/Segmentation/oks007_MRC_PTB_RWC_01.nii|RC_01]] ||[[https://simtk.org/svn/openknee/oks/oks008/Segmentation/oks008_MRC_PTB_RWC_01.nii|RC_01]] ||[[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_PTB_RWC_01.nii|RC_01]] [[https://simtk.org/svn/openknee/oks/oks009/Segmentation/oks009_MRC_PTB_SKC_01.nii|SC_01]] ||