Hi Sabush,
Thanks this was helpful.
What version of windows are you using and how much RAM do you have?
Search found 32 matches
- Mon May 18, 2020 2:37 pm
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Errror in Segmentation @ Multi vessel path using Machine learning
- Replies: 5
- Views: 890
- Wed May 13, 2020 11:26 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Errror in Segmentation @ Multi vessel path using Machine learning
- Replies: 5
- Views: 890
Re: Errror in Segmentation @ Multi vessel path using Machine learning
Thanks for the quick response, Importing an image through Open File is currently not supported. Could you try importing the image by right-clicking on "Images" in the data manager on the left side of the screen and then choosing "Add/Replace images" to import your image? You can also see how it is d...
- Wed May 13, 2020 11:06 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Errror in Segmentation @ Multi vessel path using Machine learning
- Replies: 5
- Views: 890
Re: Errror in Segmentation @ Multi vessel path using Machine learning
Hi Subash, Thanks for reaching out. To help could you answer a few questions? What image format are you using (e.g. MHA, DICOM, VTI etc.)? How are you loading the image into SimVascular? If possible could you also try launching SimVascular from a command window and then reporting any error messages ...
- Wed Feb 05, 2020 4:13 pm
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Automatic Machine learning confusion
- Replies: 1
- Views: 381
Re: Automatic Machine learning confusion
Hi Chyna,
Thanks for posting your issue.
Have you tried closing and reopening the 2D segmentation plugin? If the plugin is open when you load a project it will not read the paths, so you need to refresh it by closing/opening.
Thanks for posting your issue.
Have you tried closing and reopening the 2D segmentation plugin? If the plugin is open when you load a project it will not read the paths, so you need to refresh it by closing/opening.
- Tue Sep 24, 2019 3:18 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: 3D colliding fronts segmentation in branches
- Replies: 5
- Views: 829
Re: 3D colliding fronts segmentation in branches
Yes, if you create individual 3D segmentations for each vessel, you can then merge them together in the modeling part of SimVascular. It is a bit unclear what is going on with the segmentations in your picture. Are you saying that they do not appear in the axial/sagittal/coronal planes? Or are they ...
- Mon Sep 23, 2019 9:45 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Machine Learning Algorithm is Not Capturing Vessel Walls
- Replies: 1
- Views: 276
Re: Machine Learning Algorithm is Not Capturing Vessel Walls
Hi Frank,
I believe the resizing may be the issue. How exactly are you resizing and by how much?
I believe the resizing may be the issue. How exactly are you resizing and by how much?
- Wed Sep 11, 2019 9:56 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: 3D colliding fronts segmentation in branches
- Replies: 5
- Views: 829
Re: 3D colliding fronts segmentation in branches
Hi Lisa,
The colliding fronts algorithm will compute separate vector fields for each start/end seed combination and then union the resulting vessel models.
In your case one start seed with two end seeds should work.
Best,
Gabriel
The colliding fronts algorithm will compute separate vector fields for each start/end seed combination and then union the resulting vessel models.
In your case one start seed with two end seeds should work.
Best,
Gabriel
- Mon Sep 02, 2019 12:10 pm
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: SimVascular Crashes during ML segmenting
- Replies: 3
- Views: 845
Re: SimVascular Crashes during ML segmenting
Hi Srihari, Thanks for letting us know about this. Could you let me know the following information: * What kind of image data are you using? * What file format is the image? * How are you loading in the image? Then could you also let me know * What operating system are using? * What version of SimVa...
- Wed Mar 06, 2019 6:07 pm
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Issues with SimVascular compilation from source on Linux
- Replies: 3
- Views: 860
Re: Issues with SimVascular compilation from source on Linux
Hi Emilie, What distribution and version of linux are you building on? We have precompiled versions of all the externals which are normally downloaded when building SimVascular, usually this works fine and is the recommended process. Is there a particular reason you want to build everything from sou...
- Tue Mar 05, 2019 11:48 am
- Forum: SimVascular: Cardiovascular Modeling and Simulation Application
- Topic: Centerlines and re-slicing
- Replies: 2
- Views: 501
Re: Centerlines and re-slicing
Hi Marcela, Unfortunately you can't export the image reslices directly from within simvascular. If you have the centerline points, you could try Paraview and using one of their slice options, e.g. "slice along plane". Alternatively if you want to do it programmatically you could access VTK's reslice...