Search found 11 matches

by Michael Garrahan
Fri May 02, 2014 8:18 am
Forum: OpenMM
Topic: Openmm anisotropic pressure tensor for membrane
Replies: 3
Views: 898

Re: Openmm anisotropic pressure tensor for membrane

CHARMM's OpenMM barostat did not have anisotropic capability in release c37b2. The version under development a year ago worked exactly as Peter said. The CHARMM user forum could give you a better answer about its current status.
by Michael Garrahan
Mon Apr 22, 2013 1:47 pm
Forum: OpenMM
Topic: API change in SVN
Replies: 3
Views: 443

Re: API change in SVN

The 5.1 beta does not have those const modifiers, so at the moment our plugin has one version for the 5.1 beta and one for the head of the svn trunk. I'd like to find a way to make the same plugin source compatible with either 5.0 or 5.1 at compile time. If that isn't possible, we'll probably have t...
by Michael Garrahan
Mon Apr 22, 2013 12:21 pm
Forum: OpenMM
Topic: API change in SVN
Replies: 3
Views: 443

API change in SVN

Revision 3739 adds const modifiers to some API methods: Force::createImpl ForceImpl::getOwner If you are implementing "MyForce" in a plugin, this requires similar changes to: MyForce::createImpl MyForceImpl::MyForceImpl MyForceImpl::getOwner MyForceImpl::owner This won't be part of release 5.1, will...
by Michael Garrahan
Mon Apr 22, 2013 11:15 am
Forum: OpenMM
Topic: OpenMM 5.1 beta
Replies: 1
Views: 322

Re: OpenMM 5.1 beta

This appears to correspond to SVN r3734.
by Michael Garrahan
Thu Jan 10, 2013 12:30 pm
Forum: OpenMM
Topic: OpenMM 5.0 beta
Replies: 12
Views: 102023

Re: OpenMM 5.0 beta

Aha, I see the new Context::setVelocitiesToTemperature. That's worth mentioning in the release notes.
by Michael Garrahan
Tue Jan 08, 2013 7:37 pm
Forum: OpenMM
Topic: OpenMM 5.0 beta
Replies: 12
Views: 102023

Re: OpenMM 5.0 beta

The attached patch adds a testArgonBox function to each of four variable timestep integrator tests. It passes with r3565 but fails with r3564 under the conditions Prof. Brooks described on Jan 7.
by Michael Garrahan
Mon Jan 07, 2013 7:38 pm
Forum: OpenMM
Topic: OpenMM 5.0 beta
Replies: 12
Views: 102023

Re: OpenMM 5.0 beta

r3565 does not throw the OpenMMExceptions we were getting from our variable timestep CHARMM test script on either CUDA or OpenCL.
by Michael Garrahan
Fri Oct 05, 2012 3:26 pm
Forum: OpenMM
Topic: Implementing NBFiXes from CHARMM force fields
Replies: 2
Views: 470

Re: Implementing NBFiXes from CHARMM force fields

Here is a unit test illustrating the problem Prof. Brooks described on the Reference platform.
by Michael Garrahan
Thu Apr 19, 2012 4:58 pm
Forum: OpenMM
Topic: Notification & Fix - Fortran Type Mismatch
Replies: 2
Views: 446

Re: Notification & Fix - Fortran Type Mismatch

I agree with the suggested fix but would substitute OpenMM_False for 0.
by Michael Garrahan
Wed Feb 22, 2012 1:53 pm
Forum: OpenMM
Topic: OpenMM 2.0 Source Code
Replies: 2
Views: 457

Re: OpenMM 2.0 Source Code

I didn't realize that OpenMM 4.0 had been released. It's right there on the Downloads page but not mentioned on the News page or the openmm-news mailing list.