Search found 5 matches

by Nabil Faruk
Thu Jun 18, 2015 1:42 pm
Forum: OpenMM
Topic: RPMDMonteCarloBarostat not changing box volume?
Replies: 1
Views: 875

RPMDMonteCarloBarostat not changing box volume?

Hi, I tried out the new RPMDMonteCarloBarostat with a ~(2 nm)^3 box of (q-SPC/Fw) water at 1 bar and various update freqs (5-50 steps) and platforms (Reference, OpenCL, CUDA). However, the volume reported when I call getState() on the RPMD integrator and then getPeriodicBoxVolume() on the state does...
by Nabil Faruk
Wed Mar 20, 2013 3:39 pm
Forum: OpenMM
Topic: enforcePeriodicBox with RPMD Integrator
Replies: 1
Views: 390

enforcePeriodicBox with RPMD Integrator

Currently (I'm still on OpenMM 4.1.1 but I'm assuming this is still an issue for OpenMM 5), when you call getState() on a context set up by the RPMD Integrator and have the parameter enforcePeriodicBox=1, particle positions are translated into the box by molecule centers, but the copies are not cons...
by Nabil Faruk
Tue Jan 29, 2013 10:30 am
Forum: OpenMM
Topic: CL_OUT_OF_RESOURCES with RPMD Integrator
Replies: 4
Views: 1682

Re: CL_OUT_OF_RESOURCES with RPMD Integrator

Thanks for the response. For the limitations on the number of copies: we are interested in accelerating PIMD/RPMD of simulations of low temperature molecular systems using OpenMM. At low temperature the number of beads (fourier modes) can get very large. This number is not known a priori and so a co...
by Nabil Faruk
Mon Jan 21, 2013 3:43 pm
Forum: OpenMM
Topic: CL_OUT_OF_RESOURCES with RPMD Integrator
Replies: 4
Views: 1682

CL_OUT_OF_RESOURCES with RPMD Integrator

Hi, I have a couple of questions (OpenMM 4.1.1): 1. When I specify more than 450 copies for RPMD integrator (no matter the number of atoms), I get the following error during integration with the OpenCL platform: OpenCL internal error: CL_OUT_OF_RESOURCES error executing CL_COMMAND_NDRANGE_KERNEL on ...