<t>Hey Peter,<br/> <br/> Thanks for taking the time to help me. I think I figured out what is wrong although it is very strange.<br/> <br/> I think that "hidden" characters may have caused these issues because if I delete a line that is causing issues and then retype it that issue goes away-as if I ...

cmake 2.8.2 which should be good enough since the suggested version is 2.6 or higher.

<t>Hi,<br/> <br/> I having a problem building openmm on a linux machine from source. I was able to do it on the mac (after having some troubles early on), and then was able to make changes to the source code to fit my application. Now I want to use this changed source code on a linux machine because...

<t>Here is some more information. To compile cuda programs I need to type:<br/> <br/> nvcc --include-path /usr/local/cuda/include -L/usr/local/cuda/lib -lcuda -lcudart -lm -lpthread<br/> <br/> before the source fils. If I type:<br/> <br/> nvcc --include-path /usr/local/cuda/include<br/> <br/> I get ...

<t>Thanks for the response Peter, but the errors are still there. I have included some more of the error below. Any more ideas would be greatly appreciated.<br/> <br/> Linking CXX shared library libOpenMM.dylib<br/> Undefined symbols:<br/> "_cudaEventSynchronize", referenced from:<br/> kApplyCCMA(_g...

<t>I am having a little issue trying to build openmm from source. I got so far as to run make test and all the tests passed, but then when I do make install errors pop up when it tries to link the shared library libOpenMM.dylib. I think some file is missing but I am not sure, all the errors are cuda...

<t>Hi, I am trying to use openMM to perform protein docking calculations. Is there a way in openMM to just calculate the potential energies between the atoms of different interacting partners (i.e. molecules) of a system, excluding the energetic contributions that arise from the internal interaction...