Thank you. I included the TER.
I get this new error now.
Here is the code I use.
Search found 20 matches
- Mon Sep 16, 2019 11:51 am
- Forum: OpenMM
- Topic: no template found for amino acid
- Replies: 6
- Views: 187
- Sun Sep 15, 2019 5:47 pm
- Forum: OpenMM
- Topic: no template found for amino acid
- Replies: 6
- Views: 187
Re: no template found for amino acid
I am interested in finding the interaction between two identical proteins.
I duplicated the molecule in pymol and saved the file with two proteins.
How should I duplicate the protein using pymol in a way that openmm understands?
I duplicated the molecule in pymol and saved the file with two proteins.
How should I duplicate the protein using pymol in a way that openmm understands?
- Sun Sep 15, 2019 5:40 pm
- Forum: OpenMM
- Topic: no template found for amino acid
- Replies: 6
- Views: 187
Re: no template found for amino acid
Sorry, you already told what the error is at this post- viewtopicPhpbb.php?f=161&t=10764&p=0&st ... eaa8dddd43
However, I do not know how to resolve it.
However, I do not know how to resolve it.
- Sun Sep 15, 2019 5:00 pm
- Forum: OpenMM
- Topic: no template found for amino acid
- Replies: 6
- Views: 187
no template found for amino acid
Below is the error I get.
https://drive.google.com/file/d/13ycQF0 ... sp=sharing
Also attached are the code and the pdb file.
- Fri Sep 13, 2019 8:28 am
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
Has the fixed version been released?
- Thu Sep 05, 2019 3:54 pm
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
Below is the error I get.
- Sat Aug 31, 2019 3:07 pm
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
I get the following error.
- Wed Aug 28, 2019 4:25 pm
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
This attached file opened a month back with openmm-setup. Now it is not opening. Not sure why.
- Tue Aug 27, 2019 5:14 pm
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
I converted the attached file to pdb format (I saved it from pymol as a pdb file). This is still not opening with openmm-setup
- Tue Aug 27, 2019 4:56 am
- Forum: OpenMM
- Topic: pdb file does not open in openmm
- Replies: 14
- Views: 469
Re: pdb file does not open in openmm
Can't openmm be changed to accept this format?