Search found 4 matches

by Julian Suk
Fri Jan 14, 2022 3:12 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Jump in Wss contour
Replies: 12
Views: 695

Re: Jump in Wss contour

Hi Dave, I am using svSolver for Ubuntu 20.04 on both my machines. For multiple jobs, I create a clean simulations directory and write to different locations. I have been able to work around the issue by substituting (bash code) #/usr/bin/orterun -np 12 /usr/local/sv/svsolver/2021-09-30/svsolver sin...
by Julian Suk
Mon Jan 03, 2022 8:54 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Jump in Wss contour
Replies: 12
Views: 695

Re: Jump in Wss contour

Hi Ezat and David, I am experiencing the same problem right now. I run (the September 2021 release of) svSolver in a (twice nested) for-loop in bash for different shapes and boundary conditions using OpenMPI. For different shapes, consistently around the third or fourth loop iteration (for boundary ...
by Julian Suk
Mon Jan 03, 2022 5:30 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svsolver + mpiexec bug
Replies: 2
Views: 170

Re: svsolver + mpiexec bug

I figured out what went wrong and am sharing my fix for anyone that might run into similar problems. It appears that a recent update in my Anaconda installation has installed mpiexec and made this version the default when operating from within the Anaconda environment. (base) $ which mpiexec /home/j...
by Julian Suk
Sat Dec 18, 2021 7:41 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svsolver + mpiexec bug
Replies: 2
Views: 170

svsolver + mpiexec bug

Hi! I am running svsolver with mpiexec from a terminal in Ubuntu 20.04 on two separate machines (lab-wide server and personal workstation). It ran flawlessly on both machines about a month ago. When I try to run svsolver with mpiexec on my workstation now, I get an error message "Invalid MIT-MAGIC-C...