Awesome, thanks for the info. I think that's what I will try to do downstream once I explore the tool a bit more. I am a PhD candidate at NYU (https://hochwagenlab.bio.nyu.edu/people/). I have a decent dataset of rRNA mutations/variants so it will definitely be interesting to model them and possibly...

Hi Sam, Oh I see, thank you for your reply! I did run the 3.0 version and it seems to have formed the pair (attached is the pic). Regarding the objective, I want to model some RNA sequence variants to see whether/how they might affect its structure. Some of those variants I would ideally want to mod...

Hello, I just started using the tool (thank you for it!) did a test run (Exercise 0), but my output structure seems to be wrong (please see attached). I did not change any default parameters and was running it on Mac OS and visualized it in PyMol. Are there additional parameters or files I should sp...