Search found 13 matches

by William Yoon
Tue Sep 07, 2021 6:18 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Simulation Guide Example 3: How to write and append displacement.vtp to restart.0.1
Replies: 5
Views: 512

Re: Simulation Guide Example 3: How to write and append displacement.vtp to restart.0.1

Hi Dave, I followed your instruction, and used the resulted file for IC file. After creating the simulation file, and when I try to run the simulation, I am receiving this error message "non-zero exit code 2." The process ID for myrank (0) is (3727). The number of processes is 1. Solver Input Files ...
by William Yoon
Sun Aug 22, 2021 5:31 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Results not converted.
Replies: 4
Views: 402

Re: Results not converted.

I had same problem and I found this solution by Dave very helpful!
by William Yoon
Wed Jul 14, 2021 7:51 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

davep wrote:
Wed Jul 14, 2021 7:30 pm
Hi William,

Let's set up a Zoom meeting to figure out what's going on here. Send me an email at david.parker@stanford.edu with some times you can meet.

Cheers,
Dave
I just sent you an email.
Thank you!
by William Yoon
Wed Jul 14, 2021 7:15 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

Hi Dave, Thanks for posting the screen shots. Unfortunately, after changing the preference setting as instructed, I am receiving following message: Simulation job "job name" has failed with non-zero exit code 134. dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libgfortran.5.dylib Referenced...
by William Yoon
Mon Jul 12, 2021 11:59 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

Could you guys post the solution on the forum after the zoom meeting? Since I am also receiving same error as Ryan.
Thanks!
by William Yoon
Fri Jul 09, 2021 2:25 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

Hi William, Post the output of locate libgfortran.5.dylib On my Mac I get /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/libgfortran.5.dylib /usr/local/lib/gcc/10/libgfortran.5.dylib /usr/local/sv/svsolver/2021-06-15/lib/libgfortran.5.dylib Cheers, Dave Hi Dave, Here is my output Thanks! Z-MacBook-Pro:~ A...
by William Yoon
Thu Jul 08, 2021 9:44 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

I appreciate all your help Dave. I uninstalled gcc then did xcode-select --install then reinstalled gcc. Unfortunately, I encountered same issue... Z-MacBook-Pro:~ A$ xcode-select --install xcode-select: error: command line tools are already installed, use "Software Update" to install updates Z-MacB...
by William Yoon
Thu Jul 08, 2021 5:34 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

Hi Dave, I am using MacOS (11.4). It is intel chip. I've already un-installed and re-installed GCC by using "brew install gcc." without success... Z-MacBook-Pro:~ A$ brew install gcc Updating Homebrew... ==> Auto-updated Homebrew! Updated 2 taps (homebrew/core and homebrew/cask). ==> Updated Formula...
by William Yoon
Thu Jul 08, 2021 3:30 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: MPI Issue
Replies: 25
Views: 1646

Re: MPI Issue

Hi Dave, I entered the commands and got the following results. Z-MacBook-Pro:~ A$ cd ~/Desktop/CoronaryProject/Simulations/pulsatile_sim Z-MacBook-Pro:pulsatile_sim A$ mpiexec -np 4 /usr/local/sv/svsolver/2021-06-15/bin/svsolver solver.inp dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libg...