Search found 2 matches

by balaka mondal
Wed Dec 06, 2023 8:27 am
Forum: OpenMM
Topic: Custom anisotropic potential
Replies: 2
Views: 948

Re: Custom anisotropic potential

Hi, I am building a coarse-grained model for DNA, where the bases are represented as ellipsoids. In the model, any two bases would interact with each other following Gay-Berne potential. There are other spherical particles in the system too, say sugar beads, phosphate beads and explicit ions, which ...
by balaka mondal
Wed Nov 29, 2023 1:23 pm
Forum: OpenMM
Topic: Custom anisotropic potential
Replies: 2
Views: 948

Custom anisotropic potential

Hi everyone,
I need to implement a custom anisotropic potential (for example, only repulsive part of the Gay-Berne potential) using OpenMM. Is there a direct way to do this? I welcome any suggestions that you may have!
thanks,
Balaka