Hi Sam, That was really helpful thank you! I am struggling to figure out how to model the loop without a homology model. What would you suggest if the loop is not defined? This particular loop does have a homology model but I am trying to test if I can get close to the homology model without constra...

Hello! I am trying to model a stem-loop in SARS-CoV2 (stem-loop 2) and am running into some difficulties. I modified the tutorial input file and have gotten the base pairs to sufficiently pair, but I am struggling to get the rest of the structure to match a previously published homology model of thi...