Search found 10 matches

by Moses Hamm
Sun Nov 03, 2024 3:02 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Prescribed Motion Mesh Generation
Replies: 1
Views: 277

Prescribed Motion Mesh Generation

Hi, I have a question about generating meshes for a moving wall flow simulations. According to the documentation at https://simvascular.github.io/documentation/simcardio.html it seems there are 4 steps: 1. Segmentation 2. Surface and Volume Mesh Generation using surface_main.py and volume_mesh_main....
by Moses Hamm
Sun Sep 22, 2024 4:39 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svFSI Pre-Stress Process
Replies: 0
Views: 204

svFSI Pre-Stress Process

Hi, I am trying to run FSI simulations that take into account pre-stress. In the pre-stress ALE example, there is a Python code that extracts the pressure and traction from a CFD simulation for use in the pre-stress simulation. Does anyone know if it's possible to simply extract the pressure from th...
by Moses Hamm
Thu Sep 12, 2024 6:54 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Error: illegal instruction
Replies: 1
Views: 526

Error: illegal instruction

Hi, I'm running SimVascular version 2023.3.27 with svFSI version 2023.5.25 using Ubuntu 20 on VirtualBox with OpenMPI. I'm following along with the cylinder tutorial in https://www.youtube.com/watch?v=N4AIL-zq3XM&list=WL&index=1. After creating the input file and trying to run the simulation, I get ...
by Moses Hamm
Sun Jun 04, 2023 7:37 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Error running simulations on gateway
Replies: 1
Views: 190

Error running simulations on gateway

Hi, I'm running simulations on the SV Gateway server and they fail to start and say that cmake and openmpi cannot be loaded as requested, OpenFabrics support will be disabled, and rcrt.dat cannot be opened. I attached a link to the stderr, stdout, and simulation files. The simulation files were made...
by Moses Hamm
Wed May 31, 2023 9:59 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Velocity Divergence
Replies: 6
Views: 368

Re: Velocity Divergence

Dave, I don't necessarily care about divergence. I'm verifying simulation results, and divergence initially seemed like a simple way to check the physical consistency of the results. I stumbled across this issue, and didn't just want to ignore it. I'm now trying to gauge whether the results are actu...
by Moses Hamm
Wed May 31, 2023 5:15 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Velocity Divergence
Replies: 6
Views: 368

Re: Velocity Divergence

Hi Dave,

The interior results for the demo seem to be similar. The original results I posted are also interior snapshots btw.

It makes a bit more sense knowing that it's just an approximation. Is there a better method for computing the divergence that you suggest using?

Thanks,
Moses
by Moses Hamm
Tue May 30, 2023 9:03 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Velocity Divergence
Replies: 6
Views: 368

Re: Velocity Divergence

I am using the 2022-08-19 Windows version of the svSolver and Paraview version 5.10.0. Paraview has a filter that computes the gradient, divergence, and vorticity of the velocity from the point data in the vtu output files. I did some more digging. I downloaded the example project from https://simtk...
by Moses Hamm
Tue May 30, 2023 6:29 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Velocity Divergence
Replies: 6
Views: 368

Velocity Divergence

Hi, I have been running laminar blood flow simulations using incrementally smaller time steps in order to verify simulation convergence. The residuals and Courant numbers suggest that the simulations did indeed converge. However, when I analyzed the results in paraview, I found that the divergence o...
by Moses Hamm
Fri Dec 16, 2022 7:19 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Python API Simulations
Replies: 3
Views: 363

Re: Python API Simulations

Thanks David! Quick follow up: I plan to use the SV gateway's svPre feature once I create the .svpre file. However, it also requires the mesh-complete file. Is there an example script of how to create that using the Python API?
by Moses Hamm
Tue Dec 06, 2022 8:30 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Python API Simulations
Replies: 3
Views: 363

Python API Simulations

Hi, I see that fluid simulations can be created using sv.simulation.Fluid(). However, it appears that only velocity and resistance boundary conditions are supported. Is there a way to implement rcr boundary conditions in fluid simulations using the Python API? Or if not, is there a way to manually c...