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Search found 3 matches
- Mon Sep 23, 2024 8:42 am
- Forum: OpenMM
- Topic: GROMACS file with OpenMM: Particle coordinate is NaN
- Replies: 3
- Views: 502
- Mon Sep 23, 2024 8:34 am
- Forum: OpenMM
- Topic: GROMACS file with OpenMM: Particle coordinate is NaN
- Replies: 3
- Views: 502
Re: GROMACS file with OpenMM: Particle coordinate is NaN
Thank you Peter for your fast reply. Means a lot!
- Mon Sep 23, 2024 8:15 am
- Forum: OpenMM
- Topic: GROMACS file with OpenMM: Particle coordinate is NaN
- Replies: 3
- Views: 502
GROMACS file with OpenMM: Particle coordinate is NaN
Dear all, I have already used OpenMM for MD simulation using .psf files generated by VMD. However, this time I was going to use GROMACS output files (i.e., solvate-ionised-minimised-protein.gro and topology.top) files as the input of OpenMM. As soon as my simulation goes to the equiliberation phase,...