Search found 16 matches

by Noelia Beatriz Luque
Wed Feb 20, 2013 11:01 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

:D Thanks a lot!!!!!

both options worked well, but I think I prefer the first one!
I got bigger MM Forces than QM forces in one snapshot...
I have to check it out!
THANKS a lot!!!!
BR,
noelia
by Noelia Beatriz Luque
Wed Feb 20, 2013 10:28 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

# set radius [min [expr 0.1 * [veclength $vec]] $radius]

I am running it in linux and as you see there is nothing unusual.
I got huge arrows! (see the attach) :)

:oops:
by Noelia Beatriz Luque
Wed Feb 20, 2013 10:03 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

:( I am using that version:

Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
by Noelia Beatriz Luque
Wed Feb 20, 2013 9:34 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

yes!
After loading the last force it says

can't set "vmd_frame(2)": invalid command name "min"
by Noelia Beatriz Luque
Wed Feb 20, 2013 9:09 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Drawing forces

Hi Lee-Ping, thanks for the answer. what you said, it is what I did. That is why I think it might be my vmd version, I don't know! Now I came back to the old file you sent me, (you sent once a noelia1.tar.gz file) just in case, but even in this case I couldn't see the arrows. I attached those three ...
by Noelia Beatriz Luque
Tue Feb 19, 2013 9:23 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

Hi Lee-Ping, So far so good, I am getting some results, but still not what I expected, I tried to plot the forces as you suggested, but without succeed. I used your script drawforces.vmd and copy the QMforce.xyz and MMforce.xyz from the temp directory. I used both the all.gro and the coord.xyz files...
by Noelia Beatriz Luque
Wed Jan 16, 2013 12:28 pm
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: 2 residues force field
Replies: 1
Views: 463

2 residues force field

Dear Lee-Ping, I am still having some problems in getting good numbers for the parameters, so I have decided to start with a simpler system: Ti4+ as a residue with one atom, and, for the moment, a first shell of 5 or 6 TIP3P water molecules. I decided for this sytem, because I already have 200 confi...
by Noelia Beatriz Luque
Wed Dec 19, 2012 4:50 pm
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Re: Question about qdata.txt file and force matching

Dear Lee-Ping, sorry for the delay in answering, but I wanted first to carry on the calculations you have suggested. First of all, let me thank you for your help. It is very appreciated and your prompt replies let me progress faster than I have thought. I am also glad that you could use my "errors" ...
by Noelia Beatriz Luque
Mon Dec 17, 2012 10:59 am
Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
Topic: Question about qdata.txt file and force matching
Replies: 19
Views: 3196

Question about qdata.txt file and force matching

Dear Lee-Ping, thanks a lot for your help !! I have solved part of the problems, but some of them are still open. In particular, this particular error had to do with the fact that by using nwchem and qchem, the molecule was re-oriented to a standard orientation and the all.gro and qdata.txt were not...