Thanks a lot!!!!!
both options worked well, but I think I prefer the first one!
I got bigger MM Forces than QM forces in one snapshot...
I have to check it out!
THANKS a lot!!!!
BR,
noelia
Search found 16 matches
- Wed Feb 20, 2013 11:01 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
- Wed Feb 20, 2013 10:28 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Re: Question about qdata.txt file and force matching
# set radius [min [expr 0.1 * [veclength $vec]] $radius]
I am running it in linux and as you see there is nothing unusual.
I got huge arrows! (see the attach)
I am running it in linux and as you see there is nothing unusual.
I got huge arrows! (see the attach)
- Wed Feb 20, 2013 10:03 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Re: Question about qdata.txt file and force matching
I am using that version:
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
- Wed Feb 20, 2013 9:34 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Re: Question about qdata.txt file and force matching
yes!
After loading the last force it says
can't set "vmd_frame(2)": invalid command name "min"
After loading the last force it says
can't set "vmd_frame(2)": invalid command name "min"
- Wed Feb 20, 2013 9:09 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Drawing forces
Hi Lee-Ping, thanks for the answer. what you said, it is what I did. That is why I think it might be my vmd version, I don't know! Now I came back to the old file you sent me, (you sent once a noelia1.tar.gz file) just in case, but even in this case I couldn't see the arrows. I attached those three ...
- Tue Feb 19, 2013 9:23 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Re: Question about qdata.txt file and force matching
Hi Lee-Ping, So far so good, I am getting some results, but still not what I expected, I tried to plot the forces as you suggested, but without succeed. I used your script drawforces.vmd and copy the QMforce.xyz and MMforce.xyz from the temp directory. I used both the all.gro and the coord.xyz files...
- Wed Jan 16, 2013 12:28 pm
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: 2 residues force field
- Replies: 1
- Views: 463
2 residues force field
Dear Lee-Ping, I am still having some problems in getting good numbers for the parameters, so I have decided to start with a simpler system: Ti4+ as a residue with one atom, and, for the moment, a first shell of 5 or 6 TIP3P water molecules. I decided for this sytem, because I already have 200 confi...
- Wed Dec 19, 2012 4:50 pm
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Re: Question about qdata.txt file and force matching
Dear Lee-Ping, sorry for the delay in answering, but I wanted first to carry on the calculations you have suggested. First of all, let me thank you for your help. It is very appreciated and your prompt replies let me progress faster than I have thought. I am also glad that you could use my "errors" ...
- Mon Dec 17, 2012 11:00 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Question about qdata.txt file and force matching
I add the all.gro file here
- Mon Dec 17, 2012 10:59 am
- Forum: ForceBalance : Automatic Optimization of Force Fields and Empirical Potentials
- Topic: Question about qdata.txt file and force matching
- Replies: 19
- Views: 3196
Question about qdata.txt file and force matching
Dear Lee-Ping, thanks a lot for your help !! I have solved part of the problems, but some of them are still open. In particular, this particular error had to do with the fact that by using nwchem and qchem, the molecule was re-oriented to a standard orientation and the all.gro and qdata.txt were not...