Search found 23 matches

by M Ali Poursina
Fri Jun 04, 2010 12:39 pm
Forum: SimTK Core Toolset
Topic: VTKVisualizer
Replies: 2
Views: 409

RE: VTKVisualizer

Hi Sherm,
Thanks for your response. For the time being, we are using display.report(state) to provide the movie. But at some point, I may work on option (0), since we dont want to compare two diffrent case and running their simulations simoltanously.
Thanks again.

by M Ali Poursina
Thu Jun 03, 2010 8:55 am
Forum: SimTK Core Toolset
Topic: VTKVisualizer
Replies: 2
Views: 409

VTKVisualizer

<t>Hi,<br/> <br/> I am working with VTKVisualizer to visualize the behavior of the system. I am wondering if there is a way to save it as a movie. (I ask this, since I want to compare the behavior of the two systems qualitatively.)<br/> <br/> Thank you in advance for your time and help.<br/> <br/> R...
by M Ali Poursina
Tue Jun 01, 2010 9:42 am
Forum: SimTK Core Toolset
Topic: Thermostat
Replies: 5
Views: 755

RE: Thermostat

Hi Sherm,

Great, Got it to work.

Thanks for your help.
by M Ali Poursina
Mon May 31, 2010 6:34 pm
Forum: SimTK Core Toolset
Topic: Thermostat
Replies: 5
Views: 755

RE: Thermostat

<t>Dear Sherm,<br/> <br/> I implemented <br/> std::cout << "temp=" << thermo.getCurrentTemperature(state) << std::endl;<br/> in the eventReporter. But the error<br/> thermo undeclared indentifier<br/> appears. I just guess that I need to use some methods to get the thermostat then add line.<br/> I a...
by M Ali Poursina
Mon May 31, 2010 8:52 am
Forum: SimTK Core Toolset
Topic: Thermostat
Replies: 5
Views: 755

Thermostat

<t>Hi,<br/> <br/> I am running the example file: ExampleAdenylateMobilitiesVTK.cpp.<br/> I tried to change the thermostat to the Nose-Hoover by adding the following line in the main:<br/> Force::Thermostat (forces, matter,SimTK_BOLTZMANN_CONSTANT_MD,293.15,1.0);<br/> but it failed. <br/> How is the ...
by M Ali Poursina
Sun May 23, 2010 5:55 pm
Forum: SimTK Core Toolset
Topic: VTKEventReporter
Replies: 1
Views: 1553

VTKEventReporter

<t>Dear,<br/> I have installed Simtkcore form SimTKcore_VC9.exe. When I run the ExampleChain.cpp using Microsoft Visual C++ 208 Express Edition. if the command line:<br/> <br/> system.updDefaultSubsystem().addEventReporter(new VTKEventReporter(system, 0.02)); <br/> <br/> exists in the program, the f...
by M Ali Poursina
Thu Apr 01, 2010 11:49 am
Forum: MMB (formerly RNABuilder)
Topic: Thermostat
Replies: 1
Views: 635

Thermostat

Dear,

I am wondering what kind of thermostat is used in RNABuilder, for the example "ExampleAdenylateMobilitiesVMD.cpp", it is Velocity rescaling thermostat. Does RNABuilder use this thermostat by default for any simulation?

I thank you in advance.

Regards
by M Ali Poursina
Wed Feb 24, 2010 4:46 pm
Forum: SimTK Core Toolset
Topic: Pin the RNA to the ground
Replies: 1
Views: 655

Pin the RNA to the ground

<t>Dear, <br/> For the RNA defined as follows, I want to pin the first "A" to the ground. I would appreciate to know how I can relate MobilizedBody::pin .... to my code, or there may exist easier way to do that. <br/> <br/> CompoundSystem system;<br/> SimbodyMatterSubsystem matter(system);<br/> Deco...
by M Ali Poursina
Wed Feb 24, 2010 2:42 pm
Forum: SimTK Core Toolset
Topic: Mass Properties
Replies: 2
Views: 428

RE: Mass Properties

Thanks for your help. I didnt know that.

Regards
by M Ali Poursina
Wed Feb 24, 2010 7:30 am
Forum: SimTK Core Toolset
Topic: Mass Properties
Replies: 2
Views: 428

Mass Properties

<r>Dear,<br/> I am running a code for "AAA" by modifying the file:<br/> ExampleAdenylateMobilitiesVTK.cpp. Each residue is treated as a rigid body and the torsion is allowed at the connecting joint.<br/> I need to get the inertia properties of the each residue. When I used "getBodyMass", I get diffe...