Hi Felipe, Sorry, I did not get notified of your post. I raised the issue with the simbios guys and hopefully will not miss further posts. This is a matter of setting your LD_LIBRARY_PATH. I believe the tutorial says how to do this. A few notes: first, MMB 3.0 has just been uploaded. Please try it o...

tesst

Sorry about missing this. But it is hard to do modeling in windows. I would suggest an ubuntu boot disk, or getting a login on some linux server.

What are you trying to do? Recently a lot of our users have been packaging genomes into DNA viruses. MMB is really good at this sort of application.

Sam

Guys, Andrius is packaging OpenMM for Debian, I think it would be really convenient to be able to install the package with apt-get. Then other packages that use OpenMM could also be packaged. He submitted a bug report on github but at the risk of being annoying I thought I would cross-post here. Sam...

Hi Jinhui,

Hope all is well. Sorry for the very late reply. Been on vacation.

I have uploaded a new package 2.18.1. It has parameters.csv. it also fixes a few issues with example command files.

What are you planning to do with MMB, if it isn't confidential?

sam

I guess i needed to use

-isystem /usr/local/SimTK/include/simbody

Not sure I fully understand but in any case it is consistent with changing the search order..

Hi Sherm, I am having another problem you might be able to help with. I wrote a piece of code a couple of years ago that I am trying to compile on a new machine. However I am suddenly having circular definition issues related to simbody. To debug, I wrote a simple program: #include "/usr/local/MMB/i...

Thanks guys!

yea i suspected that might be it but couldn't find anything about it in the github comments. maybe that was back in svn days and somehow i managed to void encountering this issue.

Reposting as a single message -- had formatting issues with the prior otherwise identical post. Guys, Did something happen recently with ThreadLocal? I can't find ThreadLocal.h in the latest release of simbody (https://github.com/simbody/simbody.git ). I ask because I try to compile molmodel (which ...

sam@pe1:~/svn/molmodel/build$ make [ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o /home/sam/svn/molmodel/src/DuMMForceFieldSubsystemRep.cpp:1759:5: error: ThreadLocal does not name a type; did you mean thread_local? ThreadLocal Real localE...