Search found 189 matches
- Mon Nov 04, 2019 10:02 pm
- Forum: MMB (formerly RNABuilder)
- Topic: Run error
- Replies: 1
- Views: 684
Re: Run error
Hi Felipe, Sorry, I did not get notified of your post. I raised the issue with the simbios guys and hopefully will not miss further posts. This is a matter of setting your LD_LIBRARY_PATH. I believe the tutorial says how to do this. A few notes: first, MMB 3.0 has just been uploaded. Please try it o...
- Sat Oct 12, 2019 1:43 pm
- Forum: MMB (formerly RNABuilder)
- Topic: test1
- Replies: 0
- Views: 312
test1
tesst
- Sat Oct 12, 2019 1:20 pm
- Forum: MMB (formerly RNABuilder)
- Topic: Windows Installer
- Replies: 2
- Views: 1612
Re: Windows Installer
Sorry about missing this. But it is hard to do modeling in windows. I would suggest an ubuntu boot disk, or getting a login on some linux server.
What are you trying to do? Recently a lot of our users have been packaging genomes into DNA viruses. MMB is really good at this sort of application.
Sam
What are you trying to do? Recently a lot of our users have been packaging genomes into DNA viruses. MMB is really good at this sort of application.
Sam
- Mon Mar 25, 2019 6:16 am
- Forum: OpenMM
- Topic: Packaging OpenMM for Debian
- Replies: 0
- Views: 257
Packaging OpenMM for Debian
Guys, Andrius is packaging OpenMM for Debian, I think it would be really convenient to be able to install the package with apt-get. Then other packages that use OpenMM could also be packaged. He submitted a bug report on github but at the risk of being annoying I thought I would cross-post here. Sam...
- Mon Jan 07, 2019 10:09 am
- Forum: MMB (formerly RNABuilder)
- Topic: Mac installer missing parameters.csv file
- Replies: 1
- Views: 583
Re: Mac installer missing parameters.csv file
Hi Jinhui,
Hope all is well. Sorry for the very late reply. Been on vacation.
I have uploaded a new package 2.18.1. It has parameters.csv. it also fixes a few issues with example command files.
What are you planning to do with MMB, if it isn't confidential?
sam
Hope all is well. Sorry for the very late reply. Been on vacation.
I have uploaded a new package 2.18.1. It has parameters.csv. it also fixes a few issues with example command files.
What are you planning to do with MMB, if it isn't confidential?
sam
- Sat Oct 13, 2018 2:13 pm
- Forum: Simbody: SimTK multibody dynamics API
- Topic: odd circular definition issue
- Replies: 1
- Views: 520
Re: odd circular definition issue
I guess i needed to use
-isystem /usr/local/SimTK/include/simbody
Not sure I fully understand but in any case it is consistent with changing the search order..
-isystem /usr/local/SimTK/include/simbody
Not sure I fully understand but in any case it is consistent with changing the search order..
- Sat Oct 13, 2018 4:59 am
- Forum: Simbody: SimTK multibody dynamics API
- Topic: odd circular definition issue
- Replies: 1
- Views: 520
odd circular definition issue
Hi Sherm, I am having another problem you might be able to help with. I wrote a piece of code a couple of years ago that I am trying to compile on a new machine. However I am suddenly having circular definition issues related to simbody. To debug, I wrote a simple program: #include "/usr/local/MMB/i...
- Sat Oct 13, 2018 4:27 am
- Forum: Simbody: SimTK multibody dynamics API
- Topic: ThreadLocal.h
- Replies: 3
- Views: 673
Re: ThreadLocal.h
Thanks guys!
yea i suspected that might be it but couldn't find anything about it in the github comments. maybe that was back in svn days and somehow i managed to void encountering this issue.
yea i suspected that might be it but couldn't find anything about it in the github comments. maybe that was back in svn days and somehow i managed to void encountering this issue.
- Fri Oct 12, 2018 4:50 am
- Forum: Simbody: SimTK multibody dynamics API
- Topic: ThreadLocal.h
- Replies: 3
- Views: 673
ThreadLocal.h
Reposting as a single message -- had formatting issues with the prior otherwise identical post. Guys, Did something happen recently with ThreadLocal? I can't find ThreadLocal.h in the latest release of simbody (https://github.com/simbody/simbody.git ). I ask because I try to compile molmodel (which ...
- Thu Oct 11, 2018 9:11 pm
- Forum: Simbody: SimTK multibody dynamics API
- Topic: ThreadLocal
- Replies: 1
- Views: 448
Re: ThreadLocal
sam@pe1:~/svn/molmodel/build$ make [ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o /home/sam/svn/molmodel/src/DuMMForceFieldSubsystemRep.cpp:1759:5: error: ThreadLocal does not name a type; did you mean thread_local? ThreadLocal Real localE...