Search found 24 matches

by Karen Fitzgerald
Thu Apr 19, 2018 12:25 am
Forum: Musculoskeletal Atlas Project
Topic: OpenSim model generation with just one or two lower limb bone meshes?
Replies: 8
Views: 36543

Re: OpenSim model generation with just one or two lower limb bone meshes?

Hi Bryce, Glad you had the same results as me. Yeah I figured the location in child was non zero, just hadn't got a chance to reply. I was concerned about this 'cheat' as you say and what implications it would have further downstream. But now that you've explained it, it doesn't seem to be an issue....
by Karen Fitzgerald
Mon Apr 16, 2018 12:53 pm
Forum: Musculoskeletal Atlas Project
Topic: OpenSim model generation with just one or two lower limb bone meshes?
Replies: 8
Views: 36543

Re: OpenSim model generation with just one or two lower limb bone meshes?

Hi Bryce, Thanks for your speedy reply. Everything is laid out very clearly and makes complete sense to me as that is what I had done initially before posting up the question. But unfortunately something is going wrong. As a check I decided to use the data provided with the mapclient ...mapclient-fa...
by Karen Fitzgerald
Sun Apr 15, 2018 6:23 am
Forum: Musculoskeletal Atlas Project
Topic: OpenSim model generation with just one or two lower limb bone meshes?
Replies: 8
Views: 36543

OpenSim model generation with just one or two lower limb bone meshes?

Hi all, I had a few questions somebody may be able to help me with. Perhaps These are obvious questions but I haven't currently had success with what I'm doing. My problem is I have subject specific segmented data of the right pelvis and proximal portion of the femur. I also have motion capture data...
by Karen Fitzgerald
Mon Mar 05, 2018 3:19 am
Forum: OpenSim
Topic: Hip Capsule Ligaments
Replies: 0
Views: 59

Hip Capsule Ligaments

Hi there, I was wondering has anyone done any work on the inclusion of the hip capsule ligaments in a lower limb model i.e. the iliofemoral ligament, the pubofemoral ligament, and the ischiofemoral ligament. Finding it difficult to find stiffness values, insertion locations, reference lengths etc. t...
by Karen Fitzgerald
Mon Feb 26, 2018 9:43 am
Forum: Musculoskeletal Atlas Project
Topic: Running example workflow fails?
Replies: 2
Views: 280

Re: Running example workflow fails?

Hi Bryce,

Thanks so much for your help.

I didn't see the known bug's file in the documents tab which are very helpful. Thanks for pointing me there and your helpful reply.

Best,

Karen
by Karen Fitzgerald
Thu Feb 22, 2018 8:06 am
Forum: Musculoskeletal Atlas Project
Topic: OpenCMISS Zinc/Iron libraries for python v2.7
Replies: 5
Views: 705

Re: OpenCMISS Zinc/Iron libraries for python v2.7

Hi Marco, I see that you managed to successfully install MAP Client on Linux. Could you please provide install instructions or point me to what instructions you used in this successful install, as my install following the instructions here failed: http://map-client.readthedocs.io/en/latest/manual/MA...
by Karen Fitzgerald
Thu Feb 22, 2018 8:03 am
Forum: Musculoskeletal Atlas Project
Topic: Running example workflow fails?
Replies: 2
Views: 280

Running example workflow fails?

Hi there, After a lot of headache I finally got MAP client to install on Windows 7 using Anaconda from the details provided here http://map-client-fai-workshop.readthedocs.io/en/latest/map_installation.html I tried to execute one of the example workflows from the workshop download folder, lower limb...
by Karen Fitzgerald
Fri Feb 09, 2018 5:00 am
Forum: OpenSim
Topic: Muscle attachment co-ordinates vs time?
Replies: 10
Views: 617

Re: Muscle attachment co-ordinates vs time?

Hi Tom, Thanks for the reply. I fixed that and think I have the co-ordinate values updating correctly. However when I try to model.realizePosition(state) which I'm guessing updates the model to new co-ordinate position I get a "Unidentified function or variable" error in matlab. I'm guessing I'm pas...
by Karen Fitzgerald
Thu Feb 08, 2018 12:39 pm
Forum: OpenSim
Topic: Muscle attachment co-ordinates vs time?
Replies: 10
Views: 617

Re: Muscle attachment co-ordinates vs time?

I think the code belwo is right up until: model.updCoordinateSet().get(i).setValue(state, coordvalue); Matlab gives an error for setValue(state, cooordavlue), think I'm passing it the wrong arguments? % musclePathPoints.m % Author: Karen Fitzgerald, University College Dublin import org.opensim.model...
by Karen Fitzgerald
Thu Feb 08, 2018 12:24 pm
Forum: OpenSim
Topic: Muscle attachment co-ordinates vs time?
Replies: 10
Views: 617

Re: Muscle attachment co-ordinates vs time?

Hi thanks for the reply. So I understand what I am trying to do i.e the pseudo-code however it is the implementation that is tripping me up. i.e "Access those coordinates and update the corresponding coordinates of the model." I cannot find an example that does this in the available matlab example s...