Search found 12 matches

by Kenneth Smale
Mon Mar 15, 2021 11:37 am
Forum: OpenSim
Topic: How to convert .c3d to .mot and .trc in python
Replies: 6
Views: 709

Re: How to convert .c3d to .mot and .trc in python

Hi, I am attaching a script and some utility functions that I use in Python. Please note that some settings (rotation, mirror) should be changed to correspond to your lab's coordinate system. scripts.zip Hi @Dimitar, I've set up python 3.7 and OpenSim 4.1 in my Anaconda-Spyder environment. When I t...
by Kenneth Smale
Wed Jan 24, 2018 6:40 am
Forum: OpenSim
Topic: Rajagopal model hip improper placement?
Replies: 1
Views: 496

Re: Rajagopal model hip improper placement?

To anyone wondering, this has issue has been resolved. Along with the Rajagopal model download, it comes with a Geometry folder that you need to direct the OS GUI to instead of the default folder.
by Kenneth Smale
Mon Jan 22, 2018 12:14 pm
Forum: OpenSim
Topic: Rajagopal model hip improper placement?
Replies: 1
Views: 496

Rajagopal model hip improper placement?

Hello, I've been working with the Rajagopal model and it appears as if the femoral head is dislocated from the acetabulum (see attached *_original image). When taking the location in parent from other OpenSim models that use the Delp model as a base such as Gait1018, the hip appears to be in the cor...
by Kenneth Smale
Thu Nov 30, 2017 11:59 am
Forum: OpenSim
Topic: Muscle Analysis showing muscle fiber lengths not changing during landing task
Replies: 0
Views: 272

Muscle Analysis showing muscle fiber lengths not changing during landing task

Hello, I am using a modified Rajagopal model that replaced the Walker knee with a 6 dof customized joint. I ran CMC on the RRA results and found that certain muscles were not being activated during a landing task. I then ran a muscle analysis and discovered that these muscles were not lengthening or...
by Kenneth Smale
Wed Nov 01, 2017 8:31 am
Forum: OpenSim
Topic: RRA Optimization - Samaan et al. 2016
Replies: 4
Views: 952

Re: RRA Optimization - Samaan et al. 2016

Hi Nicos, I had this same problem, which was solved by doing the following: -Make RRA_OPT_GUI_R1 your cd in matlab -Add Matlab_Code_GUI folder and subfolders to your path -Copy over all of the following files associated with the model/trial you are trying to optimize to the RRA_OPT_GUI_R1 folder: gr...
by Kenneth Smale
Fri Oct 27, 2017 7:29 am
Forum: 2017 Fall OpenSim Virtual Workshop
Topic: Noisy muscle forces from SO
Replies: 6
Views: 802

Re: Noisy muscle forces from SO

Hi Chris,

Thank you for the information. Yes, the issue was the ligaments as they were too stiff so the SO was failing to find a solution at various time points, which resulted in the large spikes. Muscle forces are smooth when the ligaments are loosened up.

Thanks everyone for your help!

-Kenneth
by Kenneth Smale
Tue Oct 24, 2017 10:55 am
Forum: 2017 Fall OpenSim Virtual Workshop
Topic: Adding ligaments without knowing resting length
Replies: 0
Views: 283

Adding ligaments without knowing resting length

Hi Everyone, I’m applying patient-specific knee joints to the Rajagopal model based on MRI data. Therefore, I am able to discern the ligament origins and insertions as well as CSA but I am unsure how to go about determining their resting lengths. I.e. I do not know at what length these ligaments go ...
by Kenneth Smale
Tue Oct 24, 2017 10:53 am
Forum: 2017 Fall OpenSim Virtual Workshop
Topic: RRA - excessive Fy & Fz residuals near take-off
Replies: 4
Views: 345

Re: RRA - excessive Fy & Fz residuals near take-off

Hi Nicos, Yes, I had issues when there were no GRF present to account for the movement/accelerations of the bodies in space. These left very large "hand of God" residual forces at the pelvis but through the RRA optimizer I provided a link to, they were reduced down below the recommendations. I reall...
by Kenneth Smale
Tue Oct 24, 2017 8:37 am
Forum: 2017 Fall OpenSim Virtual Workshop
Topic: RRA - excessive Fy & Fz residuals near take-off
Replies: 4
Views: 345

Re: RRA - excessive Fy & Fz residuals near take-off

Hi Nicos, I've also gone through RRA and had issues with the residuals being very high. I was looking at jump landing and my residuals were high prior to landing (i.e. any GRF being read by the force plates). How do your rotational and translational errors look? Do they also satisfy the suggestions ...
by Kenneth Smale
Mon Oct 23, 2017 10:12 pm
Forum: 2017 Fall OpenSim Virtual Workshop
Topic: Noisy muscle forces from SO
Replies: 6
Views: 802

Re: Noisy muscle forces from SO

Thanks everyone for your suggestions. James - These are direct outputs of SO. Although I have run a muscle analysis, I am still rather unsure on how to effectively use the outputs. As this is one of my goals this week is to develop a better understanding of muscle analysis, do you have any literatur...