Search found 23 matches

by Samuel Lotz
Wed Jul 28, 2021 7:44 am
Forum: OpenMM
Topic: Status of System Tests
Replies: 1
Views: 108

Status of System Tests

Hi Peter, I want to run the system tests on a number of different architectures/CUDA installations to make sure we have stability. Looking at the documentation (http://docs.openmm.org/latest/userguide/library.html#system-tests) I downloaded the tests but I have a few questions/concerns. Firstly I'm ...
by Samuel Lotz
Wed Jul 28, 2021 7:33 am
Forum: OpenMM
Topic: Install OpenMM Python API to a specific directory
Replies: 2
Views: 214

Re: Install OpenMM Python API to a specific directory

I think the way to do this is to build the dists individually by running:

Code: Select all

make PythonSdist
and/or

Code: Select all

make PythonBdist
and then copying those to your python installation or put on your python path.
by Samuel Lotz
Wed Mar 17, 2021 8:00 am
Forum: OpenMM
Topic: conda installations for different CUDA builds
Replies: 2
Views: 116

Re: conda installations for different CUDA builds

Thanks Peter,
I guess I will just plan on building myself if I need to circumvent conda.
by Samuel Lotz
Tue Mar 16, 2021 1:17 pm
Forum: OpenMM
Topic: conda installations for different CUDA builds
Replies: 2
Views: 116

conda installations for different CUDA builds

For the new conda installation process, is there going to be a way to specify to install openmm built with a certain version of CUDA without actually having to install 'cudatoolkit' (and having the dependency solver figure it out presumably) through conda? I liked how the labels in the old omnia rep...
by Samuel Lotz
Thu Oct 24, 2019 11:55 am
Forum: OpenMM
Topic: Context without periodic box vectors?
Replies: 2
Views: 114

Re: Context without periodic box vectors?

Thanks for the clarification and tip that helps.
by Samuel Lotz
Thu Oct 24, 2019 10:25 am
Forum: OpenMM
Topic: Context without periodic box vectors?
Replies: 2
Views: 114

Context without periodic box vectors?

Is it possible to have a context without periodic boundary conditions? That is to have a value that explicitly indicates that there are no boundaries at all. For example I make an empty system and the default periodic boundary conditions are an arbitrary box: In [1]: import simtk.openmm as omm In [3...
by Samuel Lotz
Thu Oct 24, 2019 9:36 am
Forum: OpenMM
Topic: OpenMM 7.4
Replies: 2
Views: 247

Re: OpenMM 7.4

First of all, thanks for the improvements in this release they will be very important to applications like weighted ensemble where we have to start a lot of new simulations and build up these objects from scratch. In the release notes you mention that creating new contexts in some special cases can ...
by Samuel Lotz
Tue Aug 28, 2018 4:35 pm
Forum: OpenMM
Topic: OpenMM 7.3 beta
Replies: 5
Views: 758

Re: OpenMM 7.3 beta

Much appreciated!
by Samuel Lotz
Tue Aug 28, 2018 1:47 pm
Forum: OpenMM
Topic: OpenMM 7.3 beta
Replies: 5
Views: 758

Re: OpenMM 7.3 beta

Do you have packages built against multiple CUDA versions for OpenMM 7.2?
by Samuel Lotz
Tue Aug 28, 2018 7:41 am
Forum: OpenMM
Topic: CUDADIR and CUDA on Ubuntu 18.04
Replies: 5
Views: 217

Re: CUDADIR and CUDA on Ubuntu 18.04

Right which is why I'm asking on the forum to see if anyone had any ideas on making it work. There is no NVIDIA package for Ubuntu 18.04 yet, and I read elsewhere that there are conflicts and thus can't be made to work.