Search found 33 matches

by Rok Oblak
Thu Sep 07, 2017 11:54 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: "package require vtk" doesn't work in Ubuntu
Replies: 2
Views: 293

Re: "package require vtk" doesn't work in Ubuntu

Update: I "resolved" the issue by using an older version which used VTK 5.8 when importing it.
by Rok Oblak
Thu Aug 31, 2017 10:38 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: "package require vtk" doesn't work in Ubuntu
Replies: 2
Views: 293

"package require vtk" doesn't work in Ubuntu

Hi SimVascular team, I have a problem running SimVascular in batch mode in Ubuntu. When I try the command "package require vtk", I get the following error: package Tk 8.6 is not present attempt to provide package vtkRenderingTkTCL 6.2 failed: no version of package vtkRenderingTkTCL provided attempt ...
by Rok Oblak
Mon Aug 07, 2017 10:44 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Meshing problem with 'Aortofemoral Normal - 2' example
Replies: 10
Views: 1190

Re: Meshing problem with 'Aortofemoral Normal - 2' example

Hi,

thanks for the project. It seems I was missing the surface remesh part, now it meshes nicely.

Thanks,
Rok
by Rok Oblak
Mon Aug 07, 2017 10:43 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Command-line TetGen meshing and preparing the mesh-complete directory
Replies: 24
Views: 2181

Re: Command-line TetGen meshing and preparing the mesh-complete directory

Hi Adam, thanks and sorry for the late response. These lines almost make it work correctly - the GUI (not even the small window) doesn't start anymore, but if I run "simvascular test.tcl" where test.tcl contains the line "package require vtk" it seems the command never finishes. Other commands I tri...
by Rok Oblak
Tue Aug 01, 2017 1:17 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Meshing problem with 'Aortofemoral Normal - 2' example
Replies: 10
Views: 1190

Re: Meshing problem with 'Aortofemoral Normal - 2' example

Hi Adam, after I cut the problematic cap (and generated a new cap) I checked every other cap and everything seems OK, but I might have missed something. The following error is thrown by tetgen: PLC Error: A segment and a facet intersect at point (0,109787,0,0707731,0,527817). Segment: [27621,65235] ...
by Rok Oblak
Tue Aug 01, 2017 1:00 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Command-line TetGen meshing and preparing the mesh-complete directory
Replies: 24
Views: 2181

Re: Command-line TetGen meshing and preparing the mesh-complete directory

Hi, I've attached a screenshot of my terminal to be more clear. As you can see, if I first start simvascular with no arguments given, it starts in batch mode. However, if I provide the script name as an argument, the full GUI is opened. Screen Shot 2017-08-01 at 9.49.25 PM.png It seems the arguments...
by Rok Oblak
Mon Jul 31, 2017 3:23 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Meshing problem with 'Aortofemoral Normal - 2' example
Replies: 10
Views: 1190

Re: Meshing problem with 'Aortofemoral Normal - 2' example

Hi, As you suggested, using "nurbs" instead of "spline" for the uniform lofting parameter in the pulmonary example, I was able to get a model, but, just like the aortofemoral example, the meshing fails. I tried to check the generated aortofemoral example model and besides the cap problem - the one y...
by Rok Oblak
Mon Jul 31, 2017 3:16 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Command-line TetGen meshing and preparing the mesh-complete directory
Replies: 24
Views: 2181

Re: Command-line TetGen meshing and preparing the mesh-complete directory

Hi Adam, yes, this small window is I guess not that big of an issue, but the issue is still that if I just try to run simvascular with a script parameter (e.g. "simvascular test.tcl") the batch mode does not seem to work and the full GUI opens - no matter what is inside the "test.tcl". I'm running s...
by Rok Oblak
Tue Jul 25, 2017 11:09 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Command-line TetGen meshing and preparing the mesh-complete directory
Replies: 24
Views: 2181

Re: Command-line TetGen meshing and preparing the mesh-complete directory

Hi Adam, one of the imports I need is "package require vtk". This one is needed for writing the mesh-complete directory at the last step. However, when I simply enter this command inside the simvascular environment, a 'small' GUI window opens (but not the full GUI, for some reason) (see screenshot)....
by Rok Oblak
Sat Jul 22, 2017 7:54 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Command-line TetGen meshing and preparing the mesh-complete directory
Replies: 24
Views: 2181

Re: Command-line TetGen meshing and preparing the mesh-complete directory

Hi, yes, local size meshing does work, but you would need the model walls to be separated in separate faces (as opposed to just a single face for all the walls and the faces for the caps). But I presume if I set a smaller local edge size just for the cap faces, the resulting simulation density will ...