Dear Samuel I finally came right with the modelling, though I think for my project I will used different templates so the I don't have to worry about the atoms with the alternate conformations. I have two other questions about the software though. 1) Is it possible to do multi-template homology mode...

Thanks Sam! You got back to me so soon! I will try the new script today, thanks for taking such a close look at my template file, I guess I should have done that. The alternate residues I think represent different conformations from saturation with manganese during the original experiment. I'll try ...

Hello Samuel I am currently trying out MMB 17 to comparatively model a medium sized RNA structure (Ribozyme, 54nt). I had no problems with the RNA threading example in the tutorial and discussed else where in these forums (Good tutorial!). For my template I'm using an X-ray determined structure (4oj...