Hi Samuel, thank you very much! I have got my PhD one month ago. Now I am a Postdoc. I work on siRNA-cell penetrating peptides complexes. I published a paper during my PhD and now I completed the experimental part for another manuscript and I would like to include some models of my complexes before ...

Hi Samuel, Thank you for the fast reply! First of all I pasted the wrong file with wrong sequences. Sorry! The right one is as follows: # Put renumbered.pdb in renumberedf.pdb firstStage 2 lastStage 2 reportingInterval .5 numReportingIntervals 60 # Initial -- "target" fragment RNA A 1 AGACAGCAUUAUGC...

Hello, I am using MMB to modify the sequence of a double stranded RNA. My PDB file has a single chain where residues 1-19 and 20-38 are the two strands. I am using the tutorial for threading change the sequence and created my own text file as following: # Put renumbered.pdb in renumberedf.pdb first...