Search found 25 matches

by Peter Patalano
Mon Oct 26, 2020 12:25 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svsolver Ubuntu 20.04 compatibility
Replies: 5
Views: 659

Re: svsolver Ubuntu 20.04 compatibility

I corrected the libgfortran issue by using a copy of libgfortran.so.3 that came standalone with another program and copying it to /usr/lib/libgfortran.so.3 So, I can now run the solver from the command line but not the SV gui. This is good enough for me, but might be helpful to figure out the mpi is...
by Peter Patalano
Mon Oct 26, 2020 12:20 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svsolver Ubuntu 20.04 compatibility
Replies: 5
Views: 659

Re: svsolver Ubuntu 20.04 compatibility

Additionally, I notice that if I try to run the solver from the SV application I get the following error

Code: Select all

Run job failed with: Check MPI
The application is directed to use /usr/bin/mpiexec so I am not sure where the issue is here. I will continue to try and debug this.
by Peter Patalano
Mon Oct 26, 2020 11:45 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: svsolver Ubuntu 20.04 compatibility
Replies: 5
Views: 659

svsolver Ubuntu 20.04 compatibility

I recently upgraded the OS on one of my machines to Ubuntu 20.04. I am now having in issue with getting svsolver to run as it relies on libgfortran3 but it appears that this is not compatible with 20.04. I am wondering if anyone has run into this problem or a similar one...? :? In the meantime, I wi...
by Peter Patalano
Wed Aug 12, 2020 7:14 am
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: BCT.dat visualization
Replies: 3
Views: 343

Re: BCT.dat visualization

Hi Dave,

Thanks for your reply. I understand that the vtp file has the data visually. Maybe this question is not answerable but what I am trying to plot is the mean velocity across the inlet surface versus time to visualize a pulsatile waveform. Any ideas about that?

-Peter
by Peter Patalano
Sun Aug 09, 2020 1:18 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: BCT.dat visualization
Replies: 3
Views: 343

BCT.dat visualization

I am trying to create a visualization based on my bct.dat file. Has anyone tried this? Any helpful hints?

The goal is to velocity vs. time graphically at the inlet.
by Peter Patalano
Sun Aug 02, 2020 12:48 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Point Number and Flow File Question
Replies: 1
Views: 253

Re: Point Number and Flow File Question

Nevermind, I remembered that this is stored in bct.dat
by Peter Patalano
Sun Aug 02, 2020 12:35 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Point Number and Flow File Question
Replies: 1
Views: 253

Point Number and Flow File Question

I am looking for the file that stores the value of each point number and associated velocity. Does anyone know where this can be found? E.g. Say that my .flow file contains: 0 -20.59 0.05 -59.6 0.09 -99 0.12 -88.51 0.15 -77.42 0.18 -80.19 0.28 -58.71 0.33 -37.13 0.36 -41.68 0.38 -46.73 0.5 -33.96 0....
by Peter Patalano
Wed Apr 01, 2020 3:45 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Python API
Replies: 12
Views: 1030

Re: Python API

didn't change a thing and it is working. I'll update here if I figured out what happened.
by Peter Patalano
Wed Apr 01, 2020 1:50 pm
Forum: SimVascular: Cardiovascular Modeling and Simulation Application
Topic: Python API
Replies: 12
Views: 1030

Re: Python API

Dave, First off. You're a wizard! Thanks for your help. It works for the cylinder but on the bifurcated demo.vtp SimVascular Python Shell Copyright (c) Stanford University, The Regents of the University of California, and others. All Rights Reserved. New gRepository created from cv_solid_init TetGen...