OpenMM Zephyr - simtk.org

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Protein-ligand complex MD simulation

Last post by Ranabir Majumder « Wed Oct 16, 2019 1:55 pm

by Ranabir Majumder » Wed Oct 16, 2019 1:55 pm

0 Replies

175 Views

Last post by Ranabir Majumder
Wed Oct 16, 2019 1:55 pm
running zephyr

Last post by marzieh dehghan « Mon Mar 28, 2016 1:37 am

by marzieh dehghan » Mon Mar 28, 2016 1:37 am

0 Replies

223 Views

Last post by marzieh dehghan
Mon Mar 28, 2016 1:37 am
Zephyr deprecated, superseded by OpenMM Script Builder

Last post by Joy Ku « Mon Sep 23, 2013 3:08 pm
Replies: 2
by Joy Ku » Wed May 15, 2013 12:37 pm

2 Replies

1315 Views

Last post by Joy Ku
Mon Sep 23, 2013 3:08 pm
How to set OpenCLDeviceIndex in mdrun_openmm?

Last post by Gonzo Honzo « Wed Oct 31, 2012 7:28 am

by Gonzo Honzo » Wed Oct 31, 2012 7:28 am

0 Replies

345 Views

Last post by Gonzo Honzo
Wed Oct 31, 2012 7:28 am
Disulfide bond disappeared after energy minimisation

Last post by Anderson Wang « Wed Mar 21, 2012 4:26 pm

by Anderson Wang » Wed Mar 21, 2012 4:26 pm

0 Replies

371 Views

Last post by Anderson Wang
Wed Mar 21, 2012 4:26 pm
Fix for 'Reverting to Reference platform'

Last post by Brian Geiss « Fri Oct 07, 2011 7:27 am
Replies: 1
by Mark Friedrichs » Wed Mar 23, 2011 1:45 pm

1 Replies

746 Views

Last post by Brian Geiss
Fri Oct 07, 2011 7:27 am
Zephyr and NVidia GPU

Last post by Maxim Kondratiev « Tue Sep 20, 2011 2:43 am
Replies: 7
by Jelmer Cnossen » Wed May 26, 2010 12:13 pm

7 Replies

1849 Views

Last post by Maxim Kondratiev
Tue Sep 20, 2011 2:43 am
Weird problem with libOpenMMCuda

Last post by Trevor Cickovski « Wed Apr 13, 2011 11:14 am

by Trevor Cickovski » Wed Apr 13, 2011 11:14 am

0 Replies

413 Views

Last post by Trevor Cickovski
Wed Apr 13, 2011 11:14 am
OpenMM/Zephyr and Lipid Models

Last post by Mark Friedrichs « Fri Mar 11, 2011 3:24 pm
Replies: 1
by Jeff Johns » Tue Mar 01, 2011 1:30 am

1 Replies

731 Views

Last post by Mark Friedrichs
Fri Mar 11, 2011 3:24 pm
compile zephyr on windows

Last post by Jack Shultz « Mon Jan 10, 2011 7:57 pm
Replies: 12
by Joy Ku » Tue Jul 21, 2009 9:57 am
1

2
12 Replies

2362 Views

Last post by Jack Shultz
Mon Jan 10, 2011 7:57 pm
Can OpenMM Zephyr support dual GPU cards?

Last post by Joy Ku « Mon Jan 03, 2011 12:33 pm
Replies: 1
by Brian Geiss » Sun Jan 02, 2011 4:14 pm

1 Replies

711 Views

Last post by Joy Ku
Mon Jan 03, 2011 12:33 pm
Selecting which GPU to run on Windows

Last post by Joy Ku « Wed Oct 20, 2010 1:55 pm
Replies: 2
by Maxim Kondratiev » Mon Oct 18, 2010 5:13 am

2 Replies

894 Views

Last post by Joy Ku
Wed Oct 20, 2010 1:55 pm
Reverting to Reference Platform

Last post by Maxim Kondratiev « Mon Oct 18, 2010 5:11 am
Replies: 9
by Gary Skinner » Thu Jul 01, 2010 5:28 am

9 Replies

2167 Views

Last post by Maxim Kondratiev
Mon Oct 18, 2010 5:11 am
Installing from file named download.php

Last post by Joy Ku « Wed Oct 06, 2010 2:50 pm

by Joy Ku » Wed Oct 06, 2010 2:50 pm

0 Replies

553 Views

Last post by Joy Ku
Wed Oct 06, 2010 2:50 pm
Is OpenMM Zephyr the right choice?

Last post by Cole Gleason « Tue Sep 07, 2010 12:10 pm
Replies: 5
by Joy Ku » Wed Sep 08, 2010 2:16 pm

5 Replies

1227 Views

Last post by Cole Gleason
Tue Sep 07, 2010 12:10 pm
need latest zephyr win(VS) binaries

Last post by Joy Ku « Thu Aug 19, 2010 11:52 am
Replies: 1
by Tim Turner » Thu Aug 19, 2010 11:14 am

1 Replies

753 Views

Last post by Joy Ku
Thu Aug 19, 2010 11:52 am
ATI Support

Last post by Jack Shultz « Fri Jul 16, 2010 2:41 pm

by Jack Shultz » Fri Jul 16, 2010 2:41 pm

0 Replies

334 Views

Last post by Jack Shultz
Fri Jul 16, 2010 2:41 pm
Effective salt concentration?

Last post by Gary Skinner « Wed Jun 09, 2010 2:47 am

by Gary Skinner » Wed Jun 09, 2010 2:47 am

0 Replies

411 Views

Last post by Gary Skinner
Wed Jun 09, 2010 2:47 am
Cannot view .trr in VMD

Last post by Gary Skinner « Mon Jun 07, 2010 7:50 am
Replies: 1
by Gary Skinner » Fri Jun 04, 2010 2:37 am

1 Replies

537 Views

Last post by Gary Skinner
Mon Jun 07, 2010 7:50 am
Selecting which GPU to run a simulation

Last post by Luis Fernandes « Tue Mar 09, 2010 11:31 am
Replies: 4
by Christopher Bruns » Wed Mar 03, 2010 4:26 pm

4 Replies

1150 Views

Last post by Luis Fernandes
Tue Mar 09, 2010 11:31 am
Hardcode directories and platform

Last post by Christopher Bruns « Mon Nov 09, 2009 10:21 am
Replies: 1
by Jack Shultz » Tue Sep 22, 2009 8:45 am

1 Replies

498 Views

Last post by Christopher Bruns
Mon Nov 09, 2009 10:21 am
PDB format questions(in OpenMM Zephyr)

Last post by Christopher Bruns « Tue Sep 15, 2009 8:41 am
Replies: 1
by Cho yunsung » Sun Aug 23, 2009 11:17 pm

1 Replies

587 Views

Last post by Christopher Bruns
Tue Sep 15, 2009 8:41 am
Build error using OpenMMPreview4-WindowsVC9

Last post by Jack Shultz « Mon Sep 07, 2009 4:12 pm
Replies: 6
by Jack Shultz » Tue Aug 25, 2009 6:21 am

6 Replies

1243 Views

Last post by Jack Shultz
Mon Sep 07, 2009 4:12 pm
OpenMM Zephyr multi graphic card question

Last post by Joy Ku « Wed Aug 26, 2009 9:51 am
Replies: 1
by Cho yunsung » Tue Aug 25, 2009 8:39 pm

1 Replies

640 Views

Last post by Joy Ku
Wed Aug 26, 2009 9:51 am
OpenMM Zephyr CUDA question(in linux)

Last post by Cho yunsung « Tue Aug 25, 2009 6:48 am
Replies: 1
by Christopher Bruns » Tue Aug 25, 2009 8:01 am

1 Replies

589 Views

Last post by Cho yunsung
Tue Aug 25, 2009 6:48 am

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