MMB (formerly RNABuilder)

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RE: Modeling of RNA duplex with MD force field

Last post by Yuki Toyama « Thu Jul 11, 2024 6:28 am
Replies: 2
by Yuki Toyama » Wed Jul 10, 2024 11:53 pm

2 Replies

1414 Views

Last post by Yuki Toyama
Thu Jul 11, 2024 6:28 am
Missbonding in unpaired region

Last post by yuxiao zhang « Fri Apr 21, 2023 7:38 pm
Replies: 2
by yuxiao zhang » Thu Apr 20, 2023 7:06 am

2 Replies

2263 Views

Last post by yuxiao zhang
Fri Apr 21, 2023 7:38 pm
Modeling a stem loop in RNA

Last post by Nicole Morris « Wed May 18, 2022 12:12 pm
Replies: 2
by Nicole Morris » Thu May 05, 2022 11:47 pm

2 Replies

2045 Views

Last post by Nicole Morris
Wed May 18, 2022 12:12 pm
"dyld: Library not loaded: LibMMBlib.dylib" in python 3.7.11 on MacOS 10.14.6

Last post by Tao Liu « Sat Oct 23, 2021 6:06 pm

by Tao Liu » Sat Oct 23, 2021 6:06 pm

0 Replies

240 Views

Last post by Tao Liu
Sat Oct 23, 2021 6:06 pm
Running MMB outputs in OpenMM

Last post by Michael Kilgour « Wed May 12, 2021 6:23 am
Replies: 3
by Michael Kilgour » Tue May 11, 2021 12:56 pm

3 Replies

2435 Views

Last post by Michael Kilgour
Wed May 12, 2021 6:23 am
Exercise 0 output

Last post by Daniel S « Wed Apr 28, 2021 11:06 am
Replies: 4
by Daniel S » Wed Apr 28, 2021 8:30 am

4 Replies

2971 Views

Last post by Daniel S
Wed Apr 28, 2021 11:06 am
A test post.

Last post by Henry Kwong « Thu Apr 15, 2021 2:53 pm

by Henry Kwong » Thu Apr 15, 2021 2:53 pm

0 Replies

402 Views

Last post by Henry Kwong
Thu Apr 15, 2021 2:53 pm
how to get a folded 3D output

Last post by Samuel Flores « Wed Apr 07, 2021 6:23 am
Replies: 1
by sher ya » Thu Sep 24, 2020 2:29 pm

1 Replies

2573 Views

Last post by Samuel Flores
Wed Apr 07, 2021 6:23 am
Windows Installer

Last post by Samuel Flores « Sun Nov 24, 2019 6:36 am
Replies: 2
by Max Rempel » Tue May 14, 2019 12:47 pm

2 Replies

1916 Views

Last post by Samuel Flores
Sun Nov 24, 2019 6:36 am
Run error

Last post by Samuel Flores « Mon Nov 04, 2019 10:02 pm
Replies: 1
by Felipe Souza » Wed Oct 16, 2019 8:19 am

1 Replies

860 Views

Last post by Samuel Flores
Mon Nov 04, 2019 10:02 pm
test1

Last post by Samuel Flores « Sat Oct 12, 2019 1:43 pm

by Samuel Flores » Sat Oct 12, 2019 1:43 pm

0 Replies

460 Views

Last post by Samuel Flores
Sat Oct 12, 2019 1:43 pm
Mac installer missing parameters.csv file

Last post by Samuel Flores « Mon Jan 07, 2019 10:09 am
Replies: 1
by Jinhui Dong » Mon Dec 24, 2018 9:54 am

1 Replies

737 Views

Last post by Samuel Flores
Mon Jan 07, 2019 10:09 am
How to run MMB

Last post by Samuel Flores « Sun Aug 12, 2018 2:00 am
Replies: 1
by zhang yingshuai » Sat Aug 11, 2018 2:50 am

1 Replies

839 Views

Last post by Samuel Flores
Sun Aug 12, 2018 2:00 am
Threading a double stranded RNA

Last post by Martina Tuttolomondo « Tue Dec 19, 2017 9:04 am
Replies: 4
by Martina Tuttolomondo » Tue Dec 19, 2017 5:15 am

4 Replies

901 Views

Last post by Martina Tuttolomondo
Tue Dec 19, 2017 9:04 am
Issue with DG, DG, WatsonCrick Hoogsteen base pair

Last post by Samuel Flores « Mon Aug 28, 2017 8:05 am
Replies: 1
by Juan Canoura » Mon Jul 24, 2017 5:01 pm

1 Replies

590 Views

Last post by Samuel Flores
Mon Aug 28, 2017 8:05 am
MD run explodes

Last post by Samuel Flores « Thu Apr 27, 2017 12:42 am
Replies: 5
by Lee Xiong An » Tue Jan 10, 2017 12:23 am

5 Replies

1444 Views

Last post by Samuel Flores
Thu Apr 27, 2017 12:42 am
Naive Question : What is RNA threading and morphing

Last post by Lee Xiong An « Tue Jan 10, 2017 12:17 am
Replies: 2
by Lee Xiong An » Tue Dec 27, 2016 11:43 pm

2 Replies

813 Views

Last post by Lee Xiong An
Tue Jan 10, 2017 12:17 am
Target RNA structure automatically modified before threading

Last post by Crystal Clitheroe « Mon Sep 26, 2016 11:22 pm
Replies: 3
by Crystal Clitheroe » Wed Sep 21, 2016 7:12 pm

3 Replies

963 Views

Last post by Crystal Clitheroe
Mon Sep 26, 2016 11:22 pm
My first few runs to determine microRNA structure

Last post by kamlesh sahu « Thu Sep 22, 2016 11:00 am
Replies: 3
by kamlesh sahu » Thu Sep 22, 2016 9:00 am

3 Replies

945 Views

Last post by kamlesh sahu
Thu Sep 22, 2016 11:00 am
Modelling Insertions, RNA homology Modelling

Last post by Samuel Flores « Tue Jul 26, 2016 4:21 am
Replies: 8
by Lee Xiong An » Thu Jul 14, 2016 8:07 pm

8 Replies

2707 Views

Last post by Samuel Flores
Tue Jul 26, 2016 4:21 am
Exercise 3: Threading Azoarcus to Tetrahymena Ribozyme P6ab

Last post by Samuel Flores « Wed Jun 29, 2016 2:39 pm
Replies: 5
by Lee Xiong An » Mon Jun 27, 2016 7:44 pm

5 Replies

1110 Views

Last post by Samuel Flores
Wed Jun 29, 2016 2:39 pm
testing 123

Last post by Henry Kwong « Mon Jan 12, 2015 3:16 pm

by Henry Kwong » Mon Jan 12, 2015 3:16 pm

0 Replies

413 Views

Last post by Henry Kwong
Mon Jan 12, 2015 3:16 pm
test post

Last post by Simtk.org Admin « Mon Dec 22, 2014 4:20 pm

by Simtk.org Admin » Mon Dec 22, 2014 4:20 pm

0 Replies

358 Views

Last post by Simtk.org Admin
Mon Dec 22, 2014 4:20 pm
this is a test 2

Last post by Samuel Flores « Mon Dec 22, 2014 3:59 pm

by Samuel Flores » Mon Dec 22, 2014 3:59 pm

0 Replies

346 Views

Last post by Samuel Flores
Mon Dec 22, 2014 3:59 pm
Test alert

Last post by Samuel Flores « Mon Dec 22, 2014 7:35 am
Replies: 2
by Alex Tek » Sat Nov 16, 2013 3:38 am

2 Replies

943 Views

Last post by Samuel Flores
Mon Dec 22, 2014 7:35 am

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