First of all, Zephyr is a very nice interface to carry out simple MD simulations. I was wondering if a ligand mutation FEP interface will eventually be developed for Zephyr.
This would be high value. Most FEP methods either have an easy to use interface like Desmond/Maestro but can't use CUDA or others can use CUDA like NAMD but real pain to setup.
Any thought?
Ligand FEP and Zephyr in the future
- Peter Eastman
- Posts: 2611
- Joined: Thu Aug 09, 2007 1:25 pm
RE: Ligand FEP and Zephyr in the future
We don't currently have any plans to add FEP to Zephyr, but go ahead and enter it in the feature request tracker:
https://simtk.org/tracker/?atid=814&gro ... unc=browse
Peter
https://simtk.org/tracker/?atid=814&gro ... unc=browse
Peter