Ligand FEP and Zephyr in the future

The functionality of OpenMM will (eventually) include everything that one would need to run modern molecular simulation.
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Soumya Ray
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Ligand FEP and Zephyr in the future

Post by Soumya Ray » Wed Dec 01, 2010 8:00 am

First of all, Zephyr is a very nice interface to carry out simple MD simulations. I was wondering if a ligand mutation FEP interface will eventually be developed for Zephyr.
This would be high value. Most FEP methods either have an easy to use interface like Desmond/Maestro but can't use CUDA or others can use CUDA like NAMD but real pain to setup.
Any thought?

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Peter Eastman
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RE: Ligand FEP and Zephyr in the future

Post by Peter Eastman » Wed Dec 01, 2010 12:07 pm

We don't currently have any plans to add FEP to Zephyr, but go ahead and enter it in the feature request tracker:

https://simtk.org/tracker/?atid=814&gro ... unc=browse

Peter

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