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Openmm anisotropic pressure tensor for membrane
Posted: Thu Apr 10, 2014 9:09 am
by manishbioinfo
Dear Sir,
I am Manish Kesherwani, I am using Charmm openmm interface for simulating membrane bilayer system. Is there openmm prmc option support anisotropic pressure tensor for pressure control.
I am using Charmm C37b2 version.
Please suggest me
Thanks & Regards
Manish Kesherwani
Re: Openmm anisotropic pressure tensor for membrane
Posted: Thu Apr 10, 2014 9:18 am
by leeping
Hi Manish,
OpenMM has the anisotropic Monte Carlo barostat. I'm not sure whether the CHARMM / OpenMM interface knows how to create this object, but this documentation may be helpful:
https://simtk.org/api_docs/openmm/api6_ ... ostat.html
Thanks,
- Lee-Ping
Re: Openmm anisotropic pressure tensor for membrane
Posted: Fri Apr 11, 2014 10:23 am
by peastman
I believe the CHARMM/OpenMM interface includes a plugin with its own barostat. So far as I know, you just specify pressure options the same way you usually do in CHARMM and it uses that. But I don't know the details.
Peter
Re: Openmm anisotropic pressure tensor for membrane
Posted: Fri May 02, 2014 8:18 am
by mgarraha
CHARMM's OpenMM barostat did not have anisotropic capability in release c37b2. The version under development a year ago worked exactly as Peter said. The CHARMM user forum could give you a better answer about its current status.