simtk.org

Hi Dr. Eastman,

I'm trying to compile the latest github version of OpenMM on a linux cluster and getting the following error on executing make

[ 97%] Creating OpenMM Python swig input files...
Traceback (most recent call last):
File "/home/sbelsare/software/OpenMM/build_openmm/python/src/swig_doxygen/swigInputBuilder.py", line 719, in <module>
main()
File "/home/sbelsare/software/OpenMM/build_openmm/python/src/swig_doxygen/swigInputBuilder.py", line 693, in main
sBuilder.writeSwigFile()
File "/home/sbelsare/software/OpenMM/build_openmm/python/src/swig_doxygen/swigInputBuilder.py", line 654, in writeSwigFile
self.writeClassDeclarations()
File "/home/sbelsare/software/OpenMM/build_openmm/python/src/swig_doxygen/swigInputBuilder.py", line 338, in writeClassDeclarations
docstring = striphtmltags(docstring)
File "/home/sbelsare/software/OpenMM/build_openmm/python/src/swig_doxygen/swigInputBuilder.py", line 52, in striphtmltags
s = re.sub('\s*(<ul>.*?</ul>\s*)', replace_ul_tags, s, flags=re.MULTILINE | re.DOTALL)
TypeError: sub() got an unexpected keyword argument 'flags'
make[2]: *** [python/src/swig_doxygen/swig_lib/python/pythonprepend.i] Error 1
make[1]: *** [wrappers/python/CMakeFiles/BuildModule.dir/all] Error 2
make: *** [all] Error 2


I've recompiled the latest doxygen, but am still seeing this error. What might be the fix for this?

Thank you.

What version of Python are you using? The flags argument has been there since 2.7.

Peter

Hi Dr. Eastman,

You're right. The problem was because I was running with python 2.6.6. I changed to python 2.7.9 and the make completed successfully.

Thank you.