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I was attempting to reproduce the CMC results found in:
'.\ThoracoscapularShoulderPaperMaterials\ThoracoscapularShoulderPaperMaterials\Results\CMC'
By running "batch_CMC.m" located in:
'.\ThoracoscapularShoulderPaperMaterials\ThoracoscapularShoulderPaperMaterials\Simulations\CMC'
Following a run of "batch_IK" located in:
'.\ThoracoscapularShoulderPaperMaterials\ThoracoscapularShoulderPaperMaterials\Simulations\IK'

But from comparing the "ThoracoscapularShoulderCMC_states.sto" files I'm seeing slightly different results produced. I'm fairly confident my setup is correct as I was able to reproduce the IK results perfectly and I haven't made any changes to the "batch_CMC.m" script or the folder structure.

Does anyone have any insight into this problem?

I noticed within the Results folder: '.\ThoracoscapularShoulderPaperMaterials\ThoracoscapularShoulderPaperMaterials\Results\CMC' there is a different script "batch_CMC_all.m" which loads a version of the model that isn't included in the package ("New_Scaled_FinalTest.osim")

Maybe there is something different between that model and the "ThoracoscapularShoulderModelSubject.osim" run by the "batch_CMC.m" script?