Error running simulations on gateway

Provides a system for patient-specific cardiovascular modeling and simulation.
POST REPLY
User avatar
Moses Hamm
Posts: 10
Joined: Sun Dec 04, 2022 10:44 pm

Error running simulations on gateway

Post by Moses Hamm » Sun Jun 04, 2023 7:37 pm

Hi,
I'm running simulations on the SV Gateway server and they fail to start and say that cmake and openmpi cannot be loaded as requested, OpenFabrics support will be disabled, and rcrt.dat cannot be opened. I attached a link to the stderr, stdout, and simulation files.

The simulation files were made on Windows 10.0 with SimVascular 2022-02-09 and svSolver 2022-08-19.

https://www.dropbox.com/s/0d2bt8vl0raby ... s.zip?dl=0
Top
User avatar
David Parker
Posts: 1761
Joined: Tue Aug 23, 2005 2:43 pm

Re: Error running simulations on gateway

Post by David Parker » Mon Jun 05, 2023 11:56 am

Hello,

Looking at SimVascular.stderr I see

Code: Select all

but cannot be loaded as requested: "cmake"
   Try: "module spider cmake" to see how to load the module(s).

Lmod has detected the following error: These module(s) or extension(s) exist
but cannot be loaded as requested: "openmpi"
So it seems you couldn't load openmpi which is needed to run the simulation in parallel. I don't know how modules are specified and loaded on the Gateway, send a message to simv-support@scigap.org about this.

Cheers,
Dave
Top
POST REPLY