MPI Issue

[David Parker]

Hi Ryan,

Let's do a Zoom call if you are OK with that. Send me an email at david.parker@stanford.edu with some times that you can meet.

Cheers,
Dave

[William Yoon]

Could you guys post the solution on the forum after the zoom meeting? Since I am also receiving same error as Ryan.
Thanks!

[David Parker]

Hi William,

I met with Ryan and the following fix his problem, not sure if it will solve your problem.

Bring up SV Preferences

Screen Shot 2021-07-14 at 2.47.56 PM.png (104.86 KiB) Viewed 282 times

In the SV Preferences / SimVascular Simulation option change svSolver w/ MPI to /usr/local/sv/svsolver/2021-06-15/bin/svsolver.

Screen Shot 2021-07-14 at 2.44.39 PM.png (165.91 KiB) Viewed 282 times

The /usr/local/sv/svsolver/2021-06-15/svsolver script seems to be causing problems, not sure why yet.

Cheers,
Dave

[William Yoon]

Hi Dave,

Thanks for posting the screen shots.

Unfortunately, after changing the preference setting as instructed, I am receiving following message:

Simulation job "job name" has failed with non-zero exit code 134.

dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libgfortran.5.dylib
Referenced from: /usr/local/sv/svsolver/2021-06-15/bin/svsolver
Reason: image not found
dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libgfortran.5.dylib
Referenced from: /usr/local/sv/svsolver/2021-06-15/bin/svsolver
Reason: image not found
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libgfortran.5.dylib
Referenced from: /usr/local/sv/svsolver/2021-06-15/bin/svsolver
Reason: image not found
dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/10/libgfortran.5.dylib
Referenced from: /usr/local/sv/svsolver/2021-06-15/bin/svsolver
Reason: image not found


Thanks for the update though

William

[David Parker]

Hi William,

Let's set up a Zoom meeting to figure out what's going on here. Send me an email at david.parker@stanford.edu with some times you can meet.

Cheers,
Dave

[William Yoon]

Hi William,

Let's set up a Zoom meeting to figure out what's going on here. Send me an email at david.parker@stanford.edu with some times you can meet.

Cheers,
Dave

I just sent you an email.
Thank you!