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Machine Learning Algorithm is Not Capturing Vessel Walls

Posted: Mon Sep 23, 2019 9:40 am
by frankservin
Hello, I am currently using the 8-9-2019 version of Simvascular and I am having difficulty with the Machine Learning segmentation function. Even with an appropriate window size, it seems that the algorithm outputs a small segmentation independently of the image slice. I am using this function to capture cross-sections of the pulmonary trunk.

Here are some specifications:
- I am working on a Windows with the latest Simvascular and solvers
-I am working with MRA images with a "File" type of file.
-A collection of stacked images were loaded directly onto SImvascular and globally resized.

Attached are two images:
1.) depicts the Simvascular GUI with the estimated segmentation.
2.) depicts the command window and the file properties of the image.
Screenshot (6).png
Screenshot (6).png (262.75 KiB) Viewed 219 times
Screenshot (7).png
Screenshot (7).png (380.27 KiB) Viewed 219 times

Re: Machine Learning Algorithm is Not Capturing Vessel Walls

Posted: Mon Sep 23, 2019 9:45 am
by gmaher
Hi Frank,

I believe the resizing may be the issue. How exactly are you resizing and by how much?