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Error running simulations on gateway

Posted: Sun Jun 04, 2023 7:37 pm

by moses9401

Hi,
I'm running simulations on the SV Gateway server and they fail to start and say that cmake and openmpi cannot be loaded as requested, OpenFabrics support will be disabled, and rcrt.dat cannot be opened. I attached a link to the stderr, stdout, and simulation files.

The simulation files were made on Windows 10.0 with SimVascular 2022-02-09 and svSolver 2022-08-19.

https://www.dropbox.com/s/0d2bt8vl0raby ... s.zip?dl=0

Re: Error running simulations on gateway

Posted: Mon Jun 05, 2023 11:56 am

by davep

Hello,

Looking at SimVascular.stderr I see

Code: Select all

but cannot be loaded as requested: "cmake"
   Try: "module spider cmake" to see how to load the module(s).

Lmod has detected the following error: These module(s) or extension(s) exist
but cannot be loaded as requested: "openmpi"

So it seems you couldn't load openmpi which is needed to run the simulation in parallel. I don't know how modules are specified and loaded on the Gateway, send a message to simv-support@scigap.org about this.

Cheers,
Dave